Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20729
         (528 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   1.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   5.1  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   8.9  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +2

Query: 89  QVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 232
           + +FK       + +A+K +VV+DK K  + +  + + +   D  C +
Sbjct: 198 KTRFKTINNILENLWAKKLIVVKDKKKSRSDEQTIDICMRCHDQLCDM 245


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -3

Query: 370  EAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQYGTXNPRVGHLACYIFVG--ETH 197
            +A  + IAD L ML   L       + + H++++R+   +      HL      G  E+ 
Sbjct: 1131 KASLINIADSLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAVTEEGGDESA 1190

Query: 196  NQT 188
            N+T
Sbjct: 1191 NET 1193


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -3

Query: 370  EAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQYGTXNPRVGHLACYIFVG--ETH 197
            +A  + IAD L ML   L       + + H++++R+   +      HL      G  E+ 
Sbjct: 1131 KASLINIADSLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAVTEEGGDESA 1190

Query: 196  NQT 188
            N+T
Sbjct: 1191 NET 1193


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -3

Query: 370  EAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQYGTXNPRVGHLACYIFVG--ETH 197
            +A  + IAD L ML   L       + + H++++R+   +      HL      G  E+ 
Sbjct: 1131 KASLINIADSLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAVTEEGGDESA 1190

Query: 196  NQT 188
            N+T
Sbjct: 1191 NET 1193


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -3

Query: 370  EAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQYGTXNPRVGHLACYIFVG--ETH 197
            +A  + IAD L ML   L       + + H++++R+   +      HL      G  E+ 
Sbjct: 1131 KASLINIADSLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAVTEEGGDESA 1190

Query: 196  NQT 188
            N+T
Sbjct: 1191 NET 1193


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 370 EAVFVLIADQLNMLQHNLSDQPSHHNVATHVNK 272
           E + +L ++ LNM Q +     SH  ++  VN+
Sbjct: 301 EQMNLLHSNDLNMHQQHHQQNMSHEELSAMVNR 333


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 157 LNNEAFTSIIISFPFTTXLEFYLVPL 80
           +N++AF S+    P +   E Y  P+
Sbjct: 302 VNDDAFNSVATPTPTSVMTELYPSPV 327


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,226
Number of Sequences: 336
Number of extensions: 2618
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)