Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20729
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   110   1e-25
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   110   1e-25
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   1.7  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    26   4.0  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   5.3  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.2  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    25   9.2  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  110 bits (265), Expect = 1e-25
 Identities = 48/76 (63%), Positives = 58/76 (76%)
 Frame = +2

Query: 41  MGFVKVVKNKQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 220
           M F+K VK+  YF RYQ K++ RREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 221 TCQVAYSRIXGAILCA 268
           TCQ+  SR+ G  + A
Sbjct: 61  TCQIVSSRVNGDYVLA 76



 Score = 59.7 bits (138), Expect = 3e-10
 Identities = 30/84 (35%), Positives = 43/84 (51%)
 Frame = +1

Query: 256 HIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNV 435
           +++  A+S ELPRYG+K GL N+ AAY+TG                              
Sbjct: 73  YVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELT 132

Query: 436 EPVDNGPGAFRCYLDVGLARTTTG 507
           E +++GP  F+ +LDVGL RT+TG
Sbjct: 133 EAIEDGPRPFKVFLDVGLKRTSTG 156


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  110 bits (265), Expect = 1e-25
 Identities = 48/76 (63%), Positives = 58/76 (76%)
 Frame = +2

Query: 41  MGFVKVVKNKQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 220
           M F+K VK+  YF RYQ K++ RREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 221 TCQVAYSRIXGAILCA 268
           TCQ+  SR+ G  + A
Sbjct: 61  TCQIVSSRVNGDYVLA 76



 Score = 59.7 bits (138), Expect = 3e-10
 Identities = 30/84 (35%), Positives = 43/84 (51%)
 Frame = +1

Query: 256 HIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNV 435
           +++  A+S ELPRYG+K GL N+ AAY+TG                              
Sbjct: 73  YVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELT 132

Query: 436 EPVDNGPGAFRCYLDVGLARTTTG 507
           E +++GP  F+ +LDVGL RT+TG
Sbjct: 133 EAIEDGPRPFKVFLDVGLKRTSTG 156


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 370 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 278
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -3

Query: 382 VQVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQYGTXNP 242
           +Q F     L+    N+   NLS QP  +++  +   +   +G  NP
Sbjct: 10  IQAFRKQVPLVEKNENITFFNLSFQPPMNSIVANTINEYVDWGLYNP 56


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -3

Query: 169 FVLVLNNEAFTSIIISFPFTTXLEFYLVPLEVLFVLHNFNESHIL---NLSYKVAS 11
           F  +L     T + +SF F+T  +  +  +  LF  H F+ S ++   N+ Y+V S
Sbjct: 469 FATILAAFGTTLLSLSFVFSTSAQELMSSIIFLFSKHPFDISDVVIVNNIKYEVVS 524


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 383  LTPYTLAQQMSQVMNTMLNL-STMDQEHLDVI 475
            +  YT+ Q+ S V N++LN+   M  + +D+I
Sbjct: 958  MAEYTIRQRYSHVDNSILNIEGDMSTDRIDLI 989


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 56  VVKNKQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYN 175
           + K +    +YQ   K + E  T  Y RK+ +++ + K N
Sbjct: 485 IEKEEGELTKYQTLVKSKTEILTQLYTRKKQLLEQQGKGN 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,665
Number of Sequences: 5004
Number of extensions: 40119
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)