Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20729
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...    99   2e-21
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...    97   1e-20
03_03_0279 - 16134422-16134608,16134703-16134947,16135046-161353...    27   7.1  
02_04_0381 - 22497519-22497769,22498157-22498247                       27   7.1  
03_02_0948 - 12645972-12646010,12646612-12646750,12646846-126470...    27   9.3  

>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 47/75 (62%), Positives = 55/75 (73%)
 Frame = +2

Query: 44  GFVKVVKNKQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 223
           GFVK  K   YFKR+QVKFK RR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 224 CQVAYSRIXGAILCA 268
            Q+ Y+ I G I+ A
Sbjct: 60  AQIVYATIAGDIVMA 74



 Score = 74.1 bits (174), Expect = 6e-14
 Identities = 40/83 (48%), Positives = 45/83 (54%)
 Frame = +1

Query: 259 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 438
           ++ AAYSHELPRYG++VGLTNYAAAY TG                          +Y VE
Sbjct: 72  VMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVE 131

Query: 439 PVDNGPGAFRCYLDVGLARTTTG 507
           P D     FR  LDVGL RTTTG
Sbjct: 132 PADE-RRPFRALLDVGLIRTTTG 153


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 46/75 (61%), Positives = 54/75 (72%)
 Frame = +2

Query: 44  GFVKVVKNKQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 223
           GFVK  K   Y KR+QVKFK RR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 224 CQVAYSRIXGAILCA 268
            Q+ Y+ I G I+ A
Sbjct: 60  AQIVYATIAGDIVMA 74



 Score = 74.1 bits (174), Expect = 6e-14
 Identities = 40/83 (48%), Positives = 45/83 (54%)
 Frame = +1

Query: 259 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 438
           ++ AAYSHELPRYG++VGLTNYAAAY TG                          +Y VE
Sbjct: 72  VMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVE 131

Query: 439 PVDNGPGAFRCYLDVGLARTTTG 507
           P D     FR  LDVGL RTTTG
Sbjct: 132 PADE-RRPFRALLDVGLIRTTTG 153


>03_03_0279 -
           16134422-16134608,16134703-16134947,16135046-16135364,
           16135451-16135675,16135780-16135946,16136030-16136146,
           16136234-16136407,16136489-16136584,16136669-16136885,
           16137005-16137123,16137249-16137441,16137562-16137713,
           16137809-16137938,16138667-16138776
          Length = 816

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 228 WHVTSLLERRTIRRYLGVLY 169
           W   S LERR  RRYL +LY
Sbjct: 775 WKYVSNLERRETRRYLEMLY 794


>02_04_0381 - 22497519-22497769,22498157-22498247
          Length = 113

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 297 WCEGWSDKLCCSIFNWSAISTKTASK 374
           +C+G+ DK CC   +WS    K  SK
Sbjct: 90  YCDGYDDKSCCD--DWSGDCHKCCSK 113


>03_02_0948 -
           12645972-12646010,12646612-12646750,12646846-12647090,
           12647184-12647505,12647781-12648005,12648185-12648351,
           12648428-12648544,12648989-12649162,12649372-12649467,
           12649624-12649840,12650267-12650385,12650478-12650670,
           12651212-12651363,12651485-12651611,12651731-12651828
          Length = 809

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 228 WHVTSLLERRTIRRYLGVLYL 166
           W   S LERR  RRYL + Y+
Sbjct: 771 WKYVSKLERRETRRYLEMFYI 791


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,728,166
Number of Sequences: 37544
Number of extensions: 253641
Number of successful extensions: 466
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)