Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20729
(528 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 101 3e-22
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 93 2e-19
SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23) 29 3.1
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14) 27 7.2
SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014) 27 7.2
SB_13736| Best HMM Match : PHD (HMM E-Value=0.001) 27 7.2
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001) 27 7.2
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24) 27 7.2
SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_18587| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_12041| Best HMM Match : PHD (HMM E-Value=0.001) 27 7.2
SB_57657| Best HMM Match : PHD (HMM E-Value=0.0012) 27 9.6
SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07) 27 9.6
SB_40061| Best HMM Match : PHD (HMM E-Value=0.015) 27 9.6
SB_6963| Best HMM Match : PHD (HMM E-Value=0.054) 27 9.6
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 101 bits (243), Expect = 3e-22
Identities = 48/83 (57%), Positives = 53/83 (63%)
Frame = +1
Query: 259 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 438
I+CAAY+HELPRYGVKVGLTNYAAAY TG EYNVE
Sbjct: 11 IICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTEEVNGDEYNVE 70
Query: 439 PVDNGPGAFRCYLDVGLARTTTG 507
+D PGAFRC+LDVGLART+TG
Sbjct: 71 SIDGSPGAFRCFLDVGLARTSTG 93
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 92.7 bits (220), Expect = 2e-19
Identities = 44/83 (53%), Positives = 51/83 (61%)
Frame = +1
Query: 259 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 438
++ +AY+HELP +GVKVGLTNYAAAY TG EYNVE
Sbjct: 106 VLASAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVE 165
Query: 439 PVDNGPGAFRCYLDVGLARTTTG 507
VD PGAFRC+LDVGLART+TG
Sbjct: 166 SVDGSPGAFRCFLDVGLARTSTG 188
Score = 78.6 bits (185), Expect = 3e-15
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = +2
Query: 107 RREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 229
R +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 18 RSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58
>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1418
Score = 29.1 bits (62), Expect = 2.4
Identities = 25/90 (27%), Positives = 39/90 (43%)
Frame = +2
Query: 179 PKYRLIVRLSNKDVTCQVAYSRIXGAILCALLIHMSCHVMV*RLV*QIMLQHIQLVCY*H 358
P+Y+ I++ SN + A + L L MSC + R++ Q+ L I + H
Sbjct: 839 PQYKRILKYSNSSQSISTAINEFTNGCLKKLTYTMSCRLRTLRMIRQLKLTLINDL---H 895
Query: 359 EDCFKDLDLTPYTLAQQMSQVMNTMLNLST 448
+ F T TL S + +L LST
Sbjct: 896 QPLF-----TIITLVLPSSTFITLVLPLST 920
>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
Length = 232
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 127 ISFPFTTXLEFYLVPLEVLFVLHNFNESHILNLSYK 20
ISFPFTT E Y +V F+ N LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154
>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
Length = 961
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 264 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 380
V+C + +C+ W CCSI N S + +S +W
Sbjct: 91 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 129
>SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)
Length = 598
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 264 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 380
V+C + +C+ W CCSI N S + +S +W
Sbjct: 104 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 142
>SB_13736| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 226
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 264 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 380
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 98
>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 623
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 264 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 380
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 98
>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 264 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 380
V+C + +C+ W CCSI N S + +S +W
Sbjct: 359 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 397
>SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24)
Length = 830
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 264 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 380
V+C + +C+ W CCSI N S + +S +W
Sbjct: 645 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 683
>SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 264 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 380
V+C + +C+ W CCSI N S + +S +W
Sbjct: 184 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 222
>SB_18587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 71 QYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIX 250
Q FK + + F+ + D K L + K KY T +YR+ + + T + R
Sbjct: 14 QSFKEWTLCFEAKEMYLEDQ--NKALSGKSKYKYPTKRYRVKENIFTRPFTLKQPEVRCS 71
Query: 251 GAILCA 268
G I+C+
Sbjct: 72 GRIMCS 77
>SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 560
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 264 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 380
V+C + +C+ W CCSI N S + +S +W
Sbjct: 23 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 61
>SB_57657| Best HMM Match : PHD (HMM E-Value=0.0012)
Length = 363
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 264 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 380
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTNCCSISNESYNTLANSSCSW 98
>SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07)
Length = 721
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 109 TXLEFYLVPLEVLFVLHNFNESHILNLSYKVASTDG 2
T +EF ++ E F L N IL L+Y+ +TDG
Sbjct: 334 TLVEFAVIRNEKDFFLRNSINEGILGLAYRSLATDG 369
>SB_40061| Best HMM Match : PHD (HMM E-Value=0.015)
Length = 260
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 264 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 380
V+C + +C+ W CCSI N S + +S +W
Sbjct: 104 VKCNQKGIQRDYCDAWYHTKCCSISNDSYNTLANSSCSW 142
>SB_6963| Best HMM Match : PHD (HMM E-Value=0.054)
Length = 146
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 297 WCEGWSDKLCCSIFNWSAISTKTASKTW 380
+C+ W CCSI N S + +S +W
Sbjct: 115 YCDAWYHTKCCSISNESYNTLANSSCSW 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,295,606
Number of Sequences: 59808
Number of extensions: 317535
Number of successful extensions: 831
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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