Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20729
         (528 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...   141   1e-35
AY183375-1|AAO24765.1|  679|Anopheles gambiae NADPH cytochrome P...    24   3.6  
AY028785-1|AAK32959.1|  509|Anopheles gambiae cytochrome P450 pr...    24   3.6  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    23   8.4  

>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score =  141 bits (342), Expect = 1e-35
 Identities = 64/81 (79%), Positives = 72/81 (88%), Gaps = 1/81 (1%)
 Frame = +2

Query: 41  MGFVKVVKNKQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 220
           MGFVKVVKNKQYFKRYQV+F+ RREGKTDYYARKRL+ QDKNKYNTPK+RLIVRLSN+D+
Sbjct: 1   MGFVKVVKNKQYFKRYQVRFRRRREGKTDYYARKRLIFQDKNKYNTPKFRLIVRLSNRDI 60

Query: 221 TCQVAYSRIXG-AILCALLIH 280
           TCQ+AY RI G  I+CA   H
Sbjct: 61  TCQIAYRRIEGDRIVCAAYSH 81



 Score =  106 bits (255), Expect = 4e-25
 Identities = 53/83 (63%), Positives = 53/83 (63%)
 Frame = +1

Query: 259 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 438
           IVCAAYSHELPRYGVKVGLTNYAAAY TG                          EY VE
Sbjct: 74  IVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYAGCTDVTGEEYLVE 133

Query: 439 PVDNGPGAFRCYLDVGLARTTTG 507
           PVD GP AFRCYLDVGLARTTTG
Sbjct: 134 PVDEGPAAFRCYLDVGLARTTTG 156


>AY183375-1|AAO24765.1|  679|Anopheles gambiae NADPH cytochrome P450
           reductase protein.
          Length = 679

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 11/43 (25%), Positives = 16/43 (37%)
 Frame = -3

Query: 325 HNLSDQPSHHNVATHVNKQRTQYGTXNPRVGHLACYIFVGETH 197
           H++S     H    HV     +Y T   R+       F+ E H
Sbjct: 459 HSISSSSKLHPTTVHVTAVLVKYETKTGRLNKGVATTFLAEKH 501


>AY028785-1|AAK32959.1|  509|Anopheles gambiae cytochrome P450
           protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 383 LTPYTLAQQMSQVMNTMLNLSTMDQEHL 466
           LTP   + +M Q+  TML ++T    HL
Sbjct: 137 LTPTFTSGRMKQMFGTMLQVATELHRHL 164


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 151 CSGQEQI*HT*ISSDCASLQQRCNMP 228
           C G   I H    S+CA   QRC+ P
Sbjct: 553 CGGAHHIGH----SECARSAQRCSRP 574


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,377
Number of Sequences: 2352
Number of extensions: 11367
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 48628785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)