Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20729
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   129   1e-30
Z73423-4|CAH60746.1|  307|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z73423-3|CAA97775.2|  327|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z69386-3|CAA93432.2|  322|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical ...    27   8.3  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  129 bits (312), Expect = 1e-30
 Identities = 58/76 (76%), Positives = 66/76 (86%)
 Frame = +2

Query: 41  MGFVKVVKNKQYFKRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 220
           MG VKV+KNK YFKRYQVK + RREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60

Query: 221 TCQVAYSRIXGAILCA 268
             Q+AYS+I G ++ A
Sbjct: 61  VAQLAYSKIEGDVVVA 76



 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 39/83 (46%), Positives = 47/83 (56%)
 Frame = +1

Query: 259 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 438
           +V +AYSHELPRYG+KVGLTNYAAAY+TG                          +YNVE
Sbjct: 74  VVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVE 133

Query: 439 PVDNGPGAFRCYLDVGLARTTTG 507
             +     F+  LD+GLARTTTG
Sbjct: 134 E-EGDRAPFKAVLDIGLARTTTG 155


>Z73423-4|CAH60746.1|  307|Caenorhabditis elegans Hypothetical
           protein C03A3.1b protein.
          Length = 307

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/16 (62%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
 Frame = +3

Query: 483 RLSTHHY-WCRVFGAM 527
           +L +HHY WCR+FGA+
Sbjct: 197 KLDSHHYLWCRLFGAL 212


>Z73423-3|CAA97775.2|  327|Caenorhabditis elegans Hypothetical
           protein C03A3.1a protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/16 (62%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
 Frame = +3

Query: 483 RLSTHHY-WCRVFGAM 527
           +L +HHY WCR+FGA+
Sbjct: 217 KLDSHHYLWCRLFGAL 232


>Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical
           protein ZK1010.8 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 231 WPTLGLXVPYCVRCLFT*VATLWCEG--WSDKLCCSIFNW 344
           WP  G  VP C+  + T  + LW  G  ++++L  SIF +
Sbjct: 115 WPWFGTSVPLCI--MTTAYSVLWWSGDVFNEQLTMSIFEF 152


>Z69386-3|CAA93432.2|  322|Caenorhabditis elegans Hypothetical
           protein ZK596.3 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -3

Query: 217 IFVGETHNQTIFRCVI--FVLVLNNEAFTSIIISFPFTTXLEFYLVPLEVLFVLHNFNES 44
           + +  TH   +F+C++  FV + N+      II FP  T    + + L V+  L    +S
Sbjct: 141 VLLSMTH--ALFQCMLINFVSMANHSPTLERIIGFPLVTVETVHNLCLYVISALQYEQDS 198

Query: 43  HIL 35
           H++
Sbjct: 199 HLM 201


>AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical
           protein C29G2.5 protein.
          Length = 391

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 161 KNKYNTPKYRLIVRLSNKDVTCQVAYSRIXG 253
           K+K  TP YRL++ L + D+T  V  S I G
Sbjct: 187 KSKSRTPTYRLMLILGSLDLTGLVISSLIPG 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,948,228
Number of Sequences: 27780
Number of extensions: 232006
Number of successful extensions: 504
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)