Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20728
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    32   0.069
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.64 
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    26   6.0  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   6.0  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     26   6.0  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   7.9  

>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 32.3 bits (70), Expect = 0.069
 Identities = 24/101 (23%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
 Frame = +2

Query: 167 KLDAVYRSILLTKFFTKGWGKPENLR-RLFGSEKLYRIV---KNASNWLKETIPSPLLRN 334
           K DAVYR+ ++ K+F +   K  N++ R++ + + YR++   +  + W ++T      R 
Sbjct: 193 KADAVYRAFIMLKYFPRWVQKLRNIQSRIYSAGEAYRLILIGQMVNRWRQKT------RE 246

Query: 335 KMSPRASFLKDTSL--VLLR-NTFQESYQR*HKRHISKHCY 448
           ++  +  F K+  L  VLL+ +    ++ R H+  + +  +
Sbjct: 247 RLHQKLRFQKNAFLLDVLLKWSALTVNWNRKHEYMLKRRVF 287


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -2

Query: 503 VPAK*RQTGLQSLSGHFVGSSAWKCAFCAIS-GTIPGRCFSRGLVKYPSRSLPS 345
           +PA+ R   L  LS HF+ S + + +   I   T  G+C+   LVK P ++ P+
Sbjct: 53  LPARTRSVAL--LSSHFLQSESGRHSIANILIATENGKCYLLQLVKTPEKAFPT 104


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 23/91 (25%), Positives = 39/91 (42%)
 Frame = +2

Query: 14  CSITKITYFKFNQSFLFQPIC*RNKLGNQSYNFNLKTILFSIKIT*RMSASKLDAVYRSI 193
           C I K +    + S  F  +C      +  YN  +  ILFSI      +AS +  +   +
Sbjct: 423 CHIDK-SLISPSPSSQFPVLCTLENPSSIEYNI-ISNILFSIPTIPLKNASPIVELISYV 480

Query: 194 LLTKFFTKGWGKPENLRRLFGSEKLYRIVKN 286
           +  +FF K      + ++L  S  LY ++ N
Sbjct: 481 MKPEFFMKSQQNASDCKKLL-SSFLYFLINN 510


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 464 SGHFVGSSAWKCAFCAISGTIPGRCFSRGLVKYPSRSLPSATFCS 330
           +G+    S +   F A +G + G   S G +K PSRS+P  T  S
Sbjct: 287 TGYESFKSTFGVFFPATAGLLAGASMS-GDLKAPSRSIPKGTISS 330


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 243 RKFSGLPQPFVKNFVNRILRYTASN 169
           R F GLP+ F  +  N +LR+T+++
Sbjct: 231 RNFMGLPREFFTDTGNYVLRFTSTS 255


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 662 HKYIRDIVERRTDLINRFTKS 600
           H Y  D++ +RTD++N F +S
Sbjct: 828 HGYGNDVLVQRTDVVNNFGES 848


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,826
Number of Sequences: 5004
Number of extensions: 65258
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)