Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20728
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0711 - 5324079-5324141,5324900-5324962,5325329-5325642,532...    42   6e-04
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101...    34   0.12 
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406...    29   3.5  
01_01_1211 + 9753518-9753894,9754265-9754313,9754747-9754773           28   6.2  
11_01_0779 + 6518556-6518601,6519825-6519967,6520091-6520114,652...    28   8.2  

>02_01_0711 -
           5324079-5324141,5324900-5324962,5325329-5325642,
           5326076-5326245,5326347-5326431,5326775-5327015
          Length = 311

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 23/57 (40%), Positives = 35/57 (61%)
 Frame = +3

Query: 519 WRRRNLMVKPLLKEAGIGGIILENPFYGLRKPIDQIRSSLHNVSDIFVMGGCLILES 689
           + RR  +  PLLK+  I  ++LE+P+YG R+P  Q  S L  VSD+ ++G   I E+
Sbjct: 87  FERRLRLGGPLLKD-NIATMVLESPYYGQRRPSMQHGSKLQCVSDLLLLGKATIDEA 142


>02_04_0622 -
           24508508-24508666,24509533-24509634,24510108-24510176,
           24510294-24510362,24510428-24510502,24510584-24510688,
           24511309-24511407,24511521-24513230,24513489-24513788,
           24514748-24514846,24514962-24515079,24515166-24515251,
           24515334-24515402,24515746-24515843,24516373-24516534,
           24516779-24516787,24516970-24516991,24517620-24517712,
           24517872-24517940,24518720-24518782,24518882-24519037,
           24520895-24521230
          Length = 1355

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 203 KFFTKGWGKPENLRRLFGS--EKLYRIVKNASNWLKETIPSPLLRNK 337
           + FTK W  PE  RRLF S    + RI+ +    L++  PSP LR K
Sbjct: 437 RMFTKTW--PERSRRLFMSFDPAVQRIINDEDGGLQKRYPSPSLREK 481


>08_01_0461 -
           4063614-4064375,4064439-4066017,4066041-4066086,
           4066416-4066933,4067435-4067694,4068089-4068594,
           4068667-4071319
          Length = 2107

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = -1

Query: 237 FSGLPQPFVKNFVNRILRYTASNLLADILYVILIENKIVFKLKL 106
           FSG  +PF ++ +NRILR   SN L D L   + +  ++F L L
Sbjct: 389 FSGDYEPFSRDVINRILRIIWSN-LEDPLSQTVKQVHLIFDLLL 431


>01_01_1211 + 9753518-9753894,9754265-9754313,9754747-9754773
          Length = 150

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = -2

Query: 419 AISGTIPGRCFSRGLVKYPSRSLPSATFCSLV 324
           A SG+  GRCFSR   + PS  LP   F SLV
Sbjct: 94  AASGSSYGRCFSR--PQPPSMKLPVILFFSLV 123


>11_01_0779 +
           6518556-6518601,6519825-6519967,6520091-6520114,
           6520140-6520286,6521957-6522142,6522232-6522490,
           6522738-6522969,6523081-6523231,6523322-6523499,
           6523916-6524191,6524414-6524642,6524754-6524904,
           6525013-6525192
          Length = 733

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 239 LRRLFGSEKLYRIVKNASNWLKETIPSPLLRNKMSPRASFLKDTSLVL 382
           L RLFG E+   I +N   W+    P    R ++S ++       L+L
Sbjct: 326 LSRLFGQEQTRLITQNVVGWIGYIAPEYYYRGEISEKSDIFSLGILIL 373


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,810,861
Number of Sequences: 37544
Number of extensions: 366022
Number of successful extensions: 873
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)