Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20728
(699 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 100 1e-21
SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_53170| Best HMM Match : DUF705 (HMM E-Value=5.1) 29 4.8
SB_46989| Best HMM Match : Pox_A32 (HMM E-Value=0.023) 29 4.8
SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_21845| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067) 28 6.3
SB_43689| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0) 28 6.3
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 28 6.3
SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05) 28 8.4
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_21442| Best HMM Match : p450 (HMM E-Value=0) 28 8.4
SB_12361| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 100 bits (240), Expect = 1e-21
Identities = 48/63 (76%), Positives = 51/63 (80%)
Frame = +3
Query: 510 HFYWRRRNLMVKPLLKEAGIGGIILENPFYGLRKPIDQIRSSLHNVSDIFVMGGCLILES 689
HFYWRRRN M KPLLKE GIG IILENPFYG RKP DQ RSSL +V D+F+MG LILES
Sbjct: 125 HFYWRRRNFMAKPLLKEHGIGSIILENPFYGSRKPKDQQRSSLKHVVDLFIMGTGLILES 184
Query: 690 LVL 698
VL
Sbjct: 185 SVL 187
Score = 82.6 bits (195), Expect = 3e-16
Identities = 38/101 (37%), Positives = 59/101 (58%)
Frame = +1
Query: 196 INKILYERLG*AGKLAQIIRFRKVVSNREECFKLVERDYPVTITKEQNVAEGKLLEGYFT 375
I+K + G + ++ FR RE+C LV YPV + K + EG+F
Sbjct: 20 ISKFFTKGWGELDAVKRLFDFRLEFKEREKCASLVPSSYPVHLDKSWKRDSYYMAEGHFL 79
Query: 376 SPLEKHLPGIVPEIAQKAHFQALLPTKWPDKDCKPVCLHLA 498
SP+ K+LPGI+P+ ++ A FQ ++PTKW ++ KP+C+HLA
Sbjct: 80 SPVAKYLPGILPQQSEYARFQVIIPTKWQHRNRKPMCVHLA 120
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/33 (48%), Positives = 26/33 (78%)
Frame = +2
Query: 155 MSASKLDAVYRSILLTKFFTKGWGKPENLRRLF 253
+ S+ D YRS++++KFFTKGWG+ + ++RLF
Sbjct: 6 LGKSRSDIFYRSLVISKFFTKGWGELDAVKRLF 38
>SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 274 NREECFKLVERDYPVTITKEQNVAEGKLLEGYFTSPLEKHLPGIVPEIAQKAHFQALLPT 453
N C+K R + +Q+ A +L G+ + EK+LP I+P + + F A L T
Sbjct: 351 NGRGCYKCKARHHTSLCHDKQHNA---MLSGFTPTSDEKNLPAIIPVVIKGQTFWAYLDT 407
>SB_53170| Best HMM Match : DUF705 (HMM E-Value=5.1)
Length = 257
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = -2
Query: 377 LVKYPSRSLPSATFCSLVMVTG*SLSTNLKHSSRFDTT-------FLNRIICASFPAYPS 219
L + S+ P CS + + G S ++ KH+ R+DT+ L I+ A + PS
Sbjct: 93 LFRIVSKDAPFEARCSHIFLVGGSFTSAGKHNVRYDTSNGYESLQGLKTIVLAGYRRSPS 152
Query: 218 LS*R 207
LS R
Sbjct: 153 LSVR 156
>SB_46989| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
Length = 719
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 393 PSRNRTRDSTKGTFPSTATNKVA*QRL*TSLSSFSRNWCHFYWRRRNLMVKPLLKEAGI 569
P RDS K +P + +V R+ + + F WRRRN+ ++ L++ G+
Sbjct: 463 PYTTGARDSEKFVYPDIKSVRVTIDRMPNKVLNKGLRPTDF-WRRRNVFLREALRQRGM 520
>SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1892
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -2
Query: 458 HFVGSSAWKCAFCAI---SGTIPGRCFSRGLVKYPSRSLPSATFCS 330
HF+ K CA SG + R G V+YP +LPS + C+
Sbjct: 826 HFIAKYVTKVGTCAANSSSGVVHMRS-QAGTVRYPENALPSNSTCA 870
>SB_21845| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/87 (26%), Positives = 39/87 (44%)
Frame = +2
Query: 152 RMSASKLDAVYRSILLTKFFTKGWGKPENLRRLFGSEKLYRIVKNASNWLKETIPSPLLR 331
R S S++ Y S ++KFF + ENLRR+ S+ ++ K + IPSP+
Sbjct: 70 RHSFSRVYYKYLSNRISKFFASSFHTFENLRRI-SSDPVFTHPKIFEGYEAIGIPSPVFI 128
Query: 332 NKMSPRASFLKDTSLVLLRNTFQESYQ 412
+ + F + V + E Y+
Sbjct: 129 TSIC-QIEFQNSSLAVFTHSKIFEGYE 154
>SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)
Length = 1873
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 361 EGYFTSPLEKHLPGIVPEIAQKAHFQALLPTKWP 462
E + T PL+ P + + +AH LPT WP
Sbjct: 671 EPFCTVPLQVGTPSLYACVLSRAHRDPRLPTGWP 704
>SB_43689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -1
Query: 492 MKTNWFTIFVRPLCW*QCLEMCLLCYLWYDSWKVFLKRTSEV 367
+K W +FV P+ W +CLL L+Y W + RT+EV
Sbjct: 222 IKWRWVVVFV-PM-WIVLSLLCLLV-LYYVIWSIIFVRTTEV 260
>SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0)
Length = 493
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 534 LMVKPLLKEAGIGGIILENPFYGLRKPIDQIRSSLHNVSDIFVMGGCLI 680
L+V L+ GIGG + P Y +R L ++++F+ GG I
Sbjct: 143 LLVGRLVIGLGIGGASMTVPIYVAEAAPSSMRGKLVTLNNLFITGGQFI 191
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 312 IVSFNQFEAF-FTIRYNFSEPNNLRKFSGLPQPFVKNFVNRILRYTASNLLAD 157
I + N+ E++ F ++ SEP+ K S + VKN V +L + N LA+
Sbjct: 537 IAARNRLESYAFGVKSAISEPSLEGKLSQSDKDTVKNKVEEVLNWLEKNSLAE 589
>SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05)
Length = 889
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -2
Query: 512 MTPVPAK*RQTGLQSLSGHFVGSSAWKCAF---CAISGTIPGRCFSRGLVKY 366
++PV + +L+ G AW F C++ G++ G CF+ G + Y
Sbjct: 693 LSPVEIQESNAVAVTLAYRLYGVMAWTMPFLVACSVFGSVNGSCFALGRLTY 744
>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1958
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -1
Query: 345 GDILFLSNGDGIVSFNQFEAFFTIRYNFSEPNNLRKFSGLP 223
GD + SNGDGI N F F F ++ RK LP
Sbjct: 1194 GDDVQESNGDGIEDVNDFNIRFQRMTEFYRWDDERKLRALP 1234
>SB_21442| Best HMM Match : p450 (HMM E-Value=0)
Length = 565
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = -3
Query: 499 LLNEDKLVYNLCQATLLVAVLGNVPFVLSLVRFLEGV 389
LLN+ K+++N L+A++G +PF L RF++ V
Sbjct: 213 LLNKAKVIFN---RPFLIAIIGVLPFANFLSRFVDVV 246
>SB_12361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -2
Query: 467 LSGHFVGSSAWKCAFCAISGTIPGRCFSRG--LVKYPSRSLPSATFCSLVMVTG*SLSTN 294
+S H +G+ ++ + C +R + SLP+ TFCS+V+VT L+
Sbjct: 16 VSTHLLGTENLSSEAFRVADKMSQTCVARTHKYAAWTVLSLPTGTFCSVVLVTRGQLAKQ 75
Query: 293 L 291
L
Sbjct: 76 L 76
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,041,105
Number of Sequences: 59808
Number of extensions: 435813
Number of successful extensions: 996
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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