Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20728
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75533-6|CAA99819.1|  378|Caenorhabditis elegans Hypothetical pr...    74   9e-14
AF040642-9|AAB94950.1|  589|Caenorhabditis elegans Hypothetical ...    30   1.8  
AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z92782-8|CAB07185.1|  197|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF016448-17|AAB65962.1|  656|Caenorhabditis elegans Hypothetical...    27   9.8  

>Z75533-6|CAA99819.1|  378|Caenorhabditis elegans Hypothetical
           protein C54G4.7 protein.
          Length = 378

 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 34/59 (57%), Positives = 45/59 (76%)
 Frame = +3

Query: 510 HFYWRRRNLMVKPLLKEAGIGGIILENPFYGLRKPIDQIRSSLHNVSDIFVMGGCLILE 686
           H Y+RR  L+V  +LK+ G+G I+++NPFYG RKP +Q RSSL NV+D+FVMG  LI E
Sbjct: 126 HSYFRRHYLLVDDMLKD-GVGSILIQNPFYGDRKPPNQFRSSLENVTDLFVMGAALIAE 183



 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +1

Query: 238 LAQIIRFRKVVSNREECFKLVERDYP-VTITKEQNVAEGKLLEGYFTSPLEKHLPGIVPE 414
           + Q+ ++R+ V ++      V+   P + I K+ +       EG+F SP     P  +P 
Sbjct: 39  IKQMAKYRRDVMSKRLVMDYVKELNPKIDIVKKYSKNGVTSYEGFFASPHATLFPNHMPG 98

Query: 415 IAQKAHFQALLPTKWPDKDCKPVCLHLA 498
              +AHF+A LP K P     PVC+HLA
Sbjct: 99  NVGRAHFRAYLPQK-PG----PVCIHLA 121



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 161 ASKLDAVYRSIL-LTKFFTKGWGKPENLRRLFGSEKLYRIVKNASNWLKETIP 316
           A  +D  +RS L L++ FTK WG P+ ++++    +     +   +++KE  P
Sbjct: 12  AKHVDLKFRSALVLSQLFTKSWGHPDVIKQMAKYRRDVMSKRLVMDYVKELNP 64


>AF040642-9|AAB94950.1|  589|Caenorhabditis elegans Hypothetical
           protein C50D2.2 protein.
          Length = 589

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -2

Query: 467 LSGHFVGSSAWKCAFCAISGTIPGRCFSRGLVKYPSRSLPSATFCSLVMVT 315
           +SG F G+++  C F  I     G   +    K P+RS+P ATF S+ +VT
Sbjct: 232 VSGMFAGAAS--CFFAYIG--FDGLATAGEEAKDPARSIPIATFSSMTIVT 278


>AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical
           protein Y80D3A.9 protein.
          Length = 279

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
 Frame = -1

Query: 411 WYDSWKVFLKRTSEVSFKKLALGDILF---LSNGDGIVSFNQFEAFF---TIRYNFSEPN 250
           W D + VF      V FKK   G  +F   L N D +     FE  F   T R +    +
Sbjct: 147 WNDKFHVFSNSPPHVPFKKTEFGLKMFEEKLKNTDEMSVEQIFEKLFEIATCRTSCFPDD 206

Query: 249 NLRKFSGLPQPFVKNFVNRILRY 181
            +R  +G P+   K   +  +R+
Sbjct: 207 QIRAQTGFPEHIYKPLTSIFVRF 229


>Z92782-8|CAB07185.1|  197|Caenorhabditis elegans Hypothetical
           protein F14F8.9 protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 236 NLRRLFGSEKLYRIVKNASNWLKETIPSPLLRNKMSPRASFLKDTSLV 379
           N+R  F SEK +R+ K+  N++   +     RN+   R  FL+   L+
Sbjct: 60  NMRNRFKSEKNWRLTKSCENYINFQVRK---RNEHIDRMDFLEPQMLI 104


>AF016448-17|AAB65962.1|  656|Caenorhabditis elegans Hypothetical
           protein F41E6.14 protein.
          Length = 656

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = -1

Query: 345 GDILFLSNGDGIVSFNQFEAFFTIRYNFSEPNNLRKFSGLPQPFVKNFVNRILRYTASNL 166
           G I+ + N   I +F+     F  RY   E     K  G P   +    N ++   A ++
Sbjct: 433 GTIMVIGNSLSIRAFSTIFKLFDGRYE--EIRLFAKHGGAPLLNIVPLYNAVVLDMARDI 490

Query: 165 LADILYVILIENKIVF 118
             D+L++I   N+I F
Sbjct: 491 KPDLLWIIQGMNEITF 506


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,165,899
Number of Sequences: 27780
Number of extensions: 348375
Number of successful extensions: 919
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)