Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20728
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   1.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.7  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   8.5  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 277 REECFKLVERD-YPVTITKEQNVAEGKLLEGYFTSPLEK 390
           RE+   ++E D +P+T+   +N  E K  +   T P E+
Sbjct: 519 REQKNLMIELDKFPITLQPGKNTIEQKSTKSSVTIPFER 557


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +2

Query: 32  TYFKFNQSFLFQPIC*RNKLGNQSYNFNLKTILFSIKIT*RMSASKLDAVY 184
           ++FK  +S  FQ +   N   +  + +  KTIL+ +K+T ++S +    +Y
Sbjct: 123 SFFKNAKSVTFQTMTIPN---HYLWLYKDKTILYMVKLTLKLSCAMNFLIY 170


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 261 SEPNNLRKFSGLPQPFVKNFVNRILRYT 178
           +EP++  K SG+ +   ++ +NR+ R T
Sbjct: 275 AEPSSTSKKSGIVRSHQQSCINRVARET 302


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 213  RKAGVSRKTCADYSVQKSCIES 278
            R+  V+   C+DY  Q   IES
Sbjct: 967  RRLNVNETVCSDYFSQGGVIES 988


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 696 APKTPRSSSLPSQIYP 649
           AP+   S++LPS +YP
Sbjct: 247 APQGAASANLPSPLYP 262


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 618 DQIRSSLHNVSDIFVMGGCLI 680
           D + SSL+ +S+    GGCL+
Sbjct: 88  DGVPSSLNVISEKIGNGGCLL 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,636
Number of Sequences: 438
Number of extensions: 4457
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)