Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20726
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   1.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.3  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   9.3  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   9.3  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 493 LLDSVQQNHFGLGAVLEVQLEPVRVQFGVTSLPRTSEGAAQL 368
           ++  V  N+  LG    VQL P R+  G  +L   ++GA+ L
Sbjct: 155 IVPEVAPNNIILGNGTGVQLVPTRLANGDIALVLPTQGASPL 196


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +2

Query: 494 VSSDFFPSRESSASCCEPETTPRSCSRIRTRSA 592
           V   F P ++S      P +TP S    RT ++
Sbjct: 60  VGKGFHPWKKSPQGAPSPSSTPSSLPTQRTSTS 92


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 127  TLEASTKKTPKELS*QKR 180
            T E + KKT KEL  +K+
Sbjct: 1061 TREVAVKKTKKELEEEKK 1078


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 127  TLEASTKKTPKELS*QKR 180
            T E + KKT KEL  +K+
Sbjct: 1061 TREVAVKKTKKELEEEKK 1078


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 127  TLEASTKKTPKELS*QKR 180
            T E + KKT KEL  +K+
Sbjct: 1061 TREVAVKKTKKELEEEKK 1078


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 127  TLEASTKKTPKELS*QKR 180
            T E + KKT KEL  +K+
Sbjct: 1061 TREVAVKKTKKELEEEKK 1078


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 558 QGRAHEYGRDRPEGVGLSLRSAHKCSKNSLPRWRRKPARS 677
           + R+HE   +RP+G     R+    + + L    R+  RS
Sbjct: 68  ENRSHEPEMERPKGASNGKRARTAYTSSQLVELEREFHRS 107


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 558 QGRAHEYGRDRPEGVGLSLRSAHKCSKNSLPRWRRKPARS 677
           + R+HE   +RP+G     R+    + + L    R+  RS
Sbjct: 88  ENRSHEPEMERPKGASNGKRARTAYTSSQLVELEREFHRS 127


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,484
Number of Sequences: 336
Number of extensions: 2845
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)