Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20726
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0323 - 24392043-24393021,24393135-24393544 32 0.37
05_02_0146 + 7076818-7077264 30 2.0
03_02_0390 + 8056006-8057502 30 2.0
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224... 30 2.0
12_01_0320 + 2444131-2444586 29 3.4
11_01_0314 + 2339241-2339728,2342720-2343608 29 3.4
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 29 3.4
08_02_1092 + 24267737-24268641,24269005-24269884 29 4.5
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 29 4.5
05_05_0277 + 23780779-23781103,23781954-23782363,23782487-237830... 29 4.5
02_01_0775 + 5775949-5777385 29 4.5
01_06_0301 + 28315919-28316987,28317059-28317743,28317751-28318246 29 4.5
01_01_0522 - 3834551-3835451,3835992-3836572 29 4.5
05_05_0219 + 23371561-23371680,23371799-23372207,23374520-233746... 28 6.0
05_03_0086 + 8279518-8280320,8280923-8281844 28 6.0
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 28 6.0
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 6.0
09_02_0104 - 4329068-4329926,4330967-4331811 28 7.9
06_03_1482 + 30441670-30441758,30441848-30441959 28 7.9
05_03_0458 + 14280953-14281866,14281964-14282912 28 7.9
>04_04_0323 - 24392043-24393021,24393135-24393544
Length = 462
Score = 32.3 bits (70), Expect = 0.37
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 10 RRMKEHVFFAGIDWQQVYHQKYTPPLIPP 96
R +K H FF G+DW ++ + PP IPP
Sbjct: 369 RGIKAHPFFNGVDWDRIL-RVARPPFIPP 396
>05_02_0146 + 7076818-7077264
Length = 148
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 489 RRFPPTSFHQGRAVHRAANPKRHQGRAHEYGRDRPEGVGLSLRSAHKCSKNSLP-RWRRK 665
RR PP F A AA +R +G + G DR +++ A + + LP + R+
Sbjct: 74 RRLPPPLFSSPDAPSPAAGRRRRKGEDEDDGEDRRRRYHVNVGDAIRALREELPAAFYRE 133
Query: 666 PA 671
P+
Sbjct: 134 PS 135
>03_02_0390 + 8056006-8057502
Length = 498
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 16 MKEHVFFAGIDWQQVYHQKYTPPLIPPR 99
+K H FFAG+DW + + PP++P +
Sbjct: 410 IKRHPFFAGVDWALI--RCVAPPVVPDK 435
>02_02_0453 + 10420585-10421661,10422015-10422146,10422232-10422456,
10422555-10422680,10422777-10422839,10423214-10423296,
10424078-10424309,10424421-10424489,10424532-10424731,
10424819-10424894,10425015-10425081,10425194-10425471,
10425600-10425787,10426235-10426391,10426496-10426741
Length = 1072
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 16 MKEHVFFAGIDWQQVYHQKYTPP 84
+K H +F GIDW+Q+ YT P
Sbjct: 1009 VKRHPWFDGIDWKQIADGTYTVP 1031
>12_01_0320 + 2444131-2444586
Length = 151
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 16 MKEHVFFAGIDWQQVYHQKYTPPLIPP 96
+K H FF+G++W + + TPP +PP
Sbjct: 97 IKRHPFFSGVNWALL--RCATPPYVPP 121
>11_01_0314 + 2339241-2339728,2342720-2343608
Length = 458
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 16 MKEHVFFAGIDWQQVYHQKYTPPLIPP 96
+K H FF+G++W + + TPP +PP
Sbjct: 400 IKRHPFFSGVNWALL--RCATPPYVPP 424
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +3
Query: 501 PTSFHQGRAVHRAANPKRHQGRAHEYGRDRPEGVGLSLRSAHKCSKNSLPRWRRKPARS 677
P + + R+ + +P+R +GR+ Y R R S RS + S + PR RR+ RS
Sbjct: 143 PRNLRRERSYSCSPSPRRGRGRSRSYSRSRSRSRSYS-RSRSR-SLSGSPRARRELERS 199
>08_02_1092 + 24267737-24268641,24269005-24269884
Length = 594
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 16 MKEHVFFAGIDWQQVYHQKYTPPLIP-PRGRSTPPMPS 126
+K+H FF G++W + + +PP IP P PP P+
Sbjct: 535 IKQHPFFEGVNWALI--RCASPPEIPKPVELERPPKPA 570
>07_03_1567 -
27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 466 NDSAGHCRGGFLRLLSIKGEQCIVLRTRNDTKVVLTNTDEIGL 594
+D +GG LR ++G +V RNDT V+L DE+GL
Sbjct: 586 DDQPEWLKGGKLRDYQLEGLNFLVNGWRNDTNVIL--ADEMGL 626
>05_05_0277 +
23780779-23781103,23781954-23782363,23782487-23783016,
23785904-23785991
Length = 450
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +1
Query: 34 FAGIDWQQVYHQKYTPPLIPPRGRSTPPMP 123
F G+ W Y T P PR R T P P
Sbjct: 154 FFGLSWHSEYRMHETAPTSLPRSRFTTPHP 183
>02_01_0775 + 5775949-5777385
Length = 478
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +2
Query: 428 RLELHLENSAKPEMILLDTVEEVSSD 505
+L++ +S+KP M+L++TVEE+ D
Sbjct: 217 QLDIDRRSSSKPPMVLVNTVEELELD 242
>01_06_0301 + 28315919-28316987,28317059-28317743,28317751-28318246
Length = 749
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 6 APTNEGARFLRWHRLAAGLPPEVHSATDTAAREVNAAD 119
AP ++ AR H + PP + D AAR V A+D
Sbjct: 571 APPHDRARLFLRHARRSSAPPRAMAVYDEAARSVPASD 608
>01_01_0522 - 3834551-3835451,3835992-3836572
Length = 493
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +1
Query: 16 MKEHVFFAGIDWQQVYHQKYTPPLIPPRGRSTPPMPSTLEASTKKTP 156
+K H FF G++W V + PP +P P T+ ++ P
Sbjct: 437 VKRHPFFKGVNWALV--RSVRPPEVPAPPAPAPKKVMTMSKKERQEP 481
>05_05_0219 +
23371561-23371680,23371799-23372207,23374520-23374635,
23375385-23375855
Length = 371
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 64 HQKYTPPLIPPRGRSTPPMPSTLEASTKK 150
H + PP PP+ ++ PP P+ E+ +K
Sbjct: 71 HHQTPPPAKPPKDQTPPPPPAVSESKGQK 99
>05_03_0086 + 8279518-8280320,8280923-8281844
Length = 574
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 16 MKEHVFFAGIDWQQVYHQKYTPPLIP 93
+K+H FF G++W V + TPP +P
Sbjct: 496 IKQHPFFDGVNWALV--RSLTPPSVP 519
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 79 PPLIPPRGRSTPPMPSTLEASTKKTPKELS*QKRIRCNTRTSLW*YRNV 225
PP +PP PP P TL A+ P+E ++R R R YR +
Sbjct: 44 PPGVPP---PPPPPPQTLAAAASPRPEEAVRKRRNREELRGLFECYRRI 89
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 510 FHQGRAVHRAANPKRHQGRAHEYGRDRPEGVGLSLRSAHKCSKNSLPRWRRKPARS 677
+ +GR+ R+ +P+R + R Y R R S +S + S+N R R P S
Sbjct: 134 YRRGRSYSRSPSPRRGRSRGRSYSRSRSRSYSRS-QSPRRDSRNE--RRSRSPRDS 186
>09_02_0104 - 4329068-4329926,4330967-4331811
Length = 567
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 16 MKEHVFFAGIDWQQVYHQKYTPPLIPPRGRSTPPMPSTLEASTKKTPK 159
+K+H FF G++W + + TPP IP + ST + +T K
Sbjct: 511 IKQHPFFEGVNWALI--RCATPPDIPKPVEIPRSVASTSQKATTTAEK 556
>06_03_1482 + 30441670-30441758,30441848-30441959
Length = 66
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 494 PPRQCPAESFRAWRCSRGAARAGSGTVWRNEFATH*RRGR 375
PPR P+++ R R +A GSG N+F + RR R
Sbjct: 20 PPRVAPSDTTRIDTTQRVSAIDGSGAGCHNQFGGNQRRKR 59
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 76 TPPLIPPRGRSTPPM-PSTLEASTKKTP 156
+PP +PP + PP+ P+TL S+ TP
Sbjct: 64 SPPPLPPLQPTPPPLPPTTLSCSSHPTP 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,749,347
Number of Sequences: 37544
Number of extensions: 410395
Number of successful extensions: 1821
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1810
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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