Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20726
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19662| Best HMM Match : PH (HMM E-Value=9.7e-09)                    66   2e-11
SB_58682| Best HMM Match : RyR (HMM E-Value=5.1)                       33   0.28 
SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)                     31   0.65 
SB_56738| Best HMM Match : Extensin_2 (HMM E-Value=0.076)              31   1.1  
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)               30   1.5  
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)                   30   2.0  
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)              29   2.6  
SB_31810| Best HMM Match : Pkinase (HMM E-Value=0.17)                  29   4.6  
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)            28   8.0  
SB_540| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.0  
SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)               24   9.0  

>SB_19662| Best HMM Match : PH (HMM E-Value=9.7e-09)
          Length = 186

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 30/66 (45%), Positives = 40/66 (60%)
 Frame = +2

Query: 260 VNLEADKLEQKRKAKQKQKFDADEKESDCILHGYIKKLGGPFASAWQTRYAKLYPNRLEL 439
           VN E DK + K+K K +       ++ D +L GY+ KLGGPF ++WQ RY  L+PNRLE 
Sbjct: 7   VNQEHDKCQAKKKPKHQNSITDMAEDGDRLLEGYLYKLGGPFMNSWQRRYVHLFPNRLEW 66

Query: 440 HLENSA 457
             E  A
Sbjct: 67  RGEQMA 72


>SB_58682| Best HMM Match : RyR (HMM E-Value=5.1)
          Length = 141

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 16 MKEHVFFAGIDWQQVYHQKYTPPLIPPR 99
          +KE    A +DW+ VY ++  P  +PP+
Sbjct: 16 LKEEHLMASVDWEMVYRKELKPSFVPPK 43


>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
          Length = 293

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 347 ILHGYIKKLGGPFASAWQTRYAKLYPN 427
           I  G++KKL G F + W+ RY  LY N
Sbjct: 4   IKSGWLKKLSGFFKNTWKDRYFVLYQN 30


>SB_56738| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
          Length = 869

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 82  PLIPPRGRSTPPMPSTLEASTKKTPKELS*QKRIRCNTRTSLW 210
           P+ PP   +TPPM   +E S + +PK L  +K++  N+    W
Sbjct: 341 PIPPPLDFATPPMAPPVEFSDESSPKPL--KKKLVINSEAFPW 381


>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 64  HQKYTP-PLIPPRGRSTPPMPSTLEASTKKTPKELS 168
           HQ  TP PL PP  +S  P P T  +    TP+ L+
Sbjct: 72  HQSNTPRPLTPPSRQSNNPRPHTPPSCQSNTPRPLT 107


>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
          Length = 851

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 16  MKEHVFFAGIDWQQVYHQK 72
           +KEH+FF G+DW  +  QK
Sbjct: 139 VKEHLFFTGLDWTALLRQK 157


>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1283

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +2

Query: 269  EADKLEQKRKAKQKQKFDADEKE 337
            E   LE+KRKA++KQK + ++KE
Sbjct: 1164 EQKLLEEKRKAEEKQKLEEEDKE 1186


>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 751

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 79  PPLIPPRGRSTPPMPSTLEASTKKTPKELS 168
           PP +PP   +TPP P+T +A+T   P   S
Sbjct: 182 PPTLPPPPTTTPP-PTTTQATTTNPPTTTS 210


>SB_31810| Best HMM Match : Pkinase (HMM E-Value=0.17)
          Length = 152

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 16  MKEHVFFAGIDWQQVYHQKYTPPLIPPRGRSTPPMPSTLEASTKK 150
           +K+H F+ G+DW  +   K  P L+P      PP  ST E    K
Sbjct: 111 LKKHQFYEGVDWDGLPESK-APELLP----YLPPTSSTEEELRSK 150


>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 720

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +1

Query: 64  HQKYTPPLIPPRGR-STPPMPSTLE-ASTKKTPKEL 165
           H++ TPP  PPR      PMPST +  S +KT K++
Sbjct: 431 HEENTPPQPPPRKLFEGLPMPSTRDHMSLEKTAKDM 466


>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1427

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +3

Query: 30  FLRWHRLAAGLPPEVHSATDTAAREVNAADAFDIGSFDEEDTKGIKLTETDQMQYKDFPL 209
           F + H+  A +   +  A D   R V   D +   + D ED+ G+++  +D   YK++ L
Sbjct: 735 FRKGHQDQACVKSAISKALDEFERHVYGKDKY---ATDTEDSTGLEVETSDTSDYKNYRL 791


>SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)
          Length = 184

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 79  PPLIPPRGRSTPPMPST 129
           PP+ PP G  TPP P T
Sbjct: 133 PPVTPPPGPETPPPPDT 149


>SB_540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +2

Query: 227 AGRSR*DRIHTVNLEADKLEQKRKAKQKQKFDADEKESD 343
           +G+S+  R H+ +      E++ K K+K + DAD+ + +
Sbjct: 63  SGKSKKKRHHSPSASESDSEKRPKGKEKSRKDADDSDQE 101


>SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 23.8 bits (49), Expect(2) = 9.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 109 TPPMPSTLEASTKKTP 156
           TPP+PS  E+S+ K P
Sbjct: 108 TPPIPSPSESSSPKRP 123



 Score = 22.2 bits (45), Expect(2) = 9.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 67  QKYTPPLIPPRGRSTPPMPSTLE 135
           Q +TP L P    +TP  PS L+
Sbjct: 81  QTFTPILQPSYQPTTPQQPSLLD 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,490,551
Number of Sequences: 59808
Number of extensions: 416033
Number of successful extensions: 1578
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)