Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20726
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    25   0.88 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.88 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.88 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.88 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.88 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.2  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 49  WQQVYHQKYTPPLIPPRGRSTPPMP 123
           W++VY   Y  P      R+TPP P
Sbjct: 232 WEEVYIPLYQQPERHYERRATPPQP 256


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = +2

Query: 539 CEPETTPRSCSRIRTRSA*RSGPVAAFGSQMFQELLASMAKKAGKI 676
           C PE   + C  ++  SA +  PV+    +   E +  + KK   +
Sbjct: 37  CVPEIYSKECDEMKKDSAVKGIPVSCISGRDRYECIEKVGKKEADV 82


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = +2

Query: 539 CEPETTPRSCSRIRTRSA*RSGPVAAFGSQMFQELLASMAKKAGKI 676
           C PE   + C  ++  SA +  PV+    +   E +  + KK   +
Sbjct: 37  CVPEIYSKECDEMKKDSAVKGIPVSCISGRDRYECIEKVGKKEADV 82


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = +2

Query: 539 CEPETTPRSCSRIRTRSA*RSGPVAAFGSQMFQELLASMAKKAGKI 676
           C PE   + C  ++  SA +  PV+    +   E +  + KK   +
Sbjct: 37  CVPEIYSKECDEMKKDSAVKGIPVSCISGRDRYECIEKVGKKEADV 82


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +1

Query: 16  MKEHVFFAGIDWQQVYHQKYTPPLIP 93
           +++H +F G +W+ +  +   PP++P
Sbjct: 620 IQKHKWFDGFNWEGLRARTLEPPIMP 645


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 46  DWQQVYHQKYTPPLIPPRGRSTPPMP 123
           DWQ+ ++  Y P +    G   P  P
Sbjct: 286 DWQKPFYPGYYPTMTYSNGLPFPQRP 311


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 46  DWQQVYHQKYTPPLIPPRGRSTPPMP 123
           DWQ+ ++  Y P +    G   P  P
Sbjct: 286 DWQKPFYPGYYPTMTYSNGLPFPQRP 311


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 76  CTSGGKPAANRCQRRKRA 23
           C S GK  AN C+  + A
Sbjct: 118 CASNGKIYANHCELHRAA 135


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 76   TPPLIPPRGRSTPPMPSTLE 135
            T P    RGR TPP P+  +
Sbjct: 987  TDPSPFKRGRYTPPQPANAQ 1006


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,594
Number of Sequences: 438
Number of extensions: 3461
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)