Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20725
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    28   1.1  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   2.6  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   6.1  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   8.0  

>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -1

Query: 543 YMVSSCLRACTAVTAEARNVGVCGEGGARDSRRPRTGAPEPPCLAGPQRGVHAHAAPGPS 364
           ++VS  ++    +    R   + G G AR + R       P  LAGP RGV  + AP P 
Sbjct: 74  FIVSLSVQGPPPMDPSMRGSLLSGPGVARPAGRGIPLGQAPVGLAGPVRGV-GYTAPPPP 132

Query: 363 SG 358
           +G
Sbjct: 133 AG 134


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 310  LIYPEMHRKVLFNFCDASLFFQGFINFLLRFEVSGHCHS 194
            +I P ++    F+F D  + ++ F+ +L R    GH HS
Sbjct: 1453 VICPFIYNPHQFSFVDFFVDYREFLRWLSRGNTKGHAHS 1491


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
 Frame = -1

Query: 537 VSSCLRACTAVTAE-ARNVGVCGEGGARDSRRP----RTG-APEPPCLAGPQRGVHAHAA 376
           V   L   T+V +E A + GV G  G      P    RT  A  PP   G Q G   +A 
Sbjct: 9   VHPILSHSTSVVSERASSSGVNGTNGGMKQVSPVSTARTSIARRPPSTVGSQTGSLVNAP 68

Query: 375 PGPSSG 358
           P  SSG
Sbjct: 69  PKRSSG 74


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 566 PQPTIASLAAARSVTPDTLLRTAALGLHHTPMVAPTSSS 682
           P+P+ A  AA  S +  T + TA L     P+V P +++
Sbjct: 391 PKPSFAKQAAVGSQSSTTSMTTARLLSDRFPVVMPVANT 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,595,891
Number of Sequences: 5004
Number of extensions: 50045
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)