Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20725
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_10081| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-38) 32 0.52
SB_13481| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_6891| Best HMM Match : Bac_chlorC (HMM E-Value=3.7) 29 2.8
SB_54540| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=2.2) 29 2.8
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23) 29 3.7
SB_53159| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_21353| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_18392| Best HMM Match : DUF1635 (HMM E-Value=5.3) 29 4.9
SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3) 28 8.5
SB_15118| Best HMM Match : IncA (HMM E-Value=0.44) 28 8.5
>SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 905
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 584 WRWWAAGAPTRPPRTWCRLASEPA 513
WRWW++G RPPR L S PA
Sbjct: 555 WRWWSSGLAPRPPRFRETLMSCPA 578
>SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 32.3 bits (70), Expect = 0.40
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 474 GEGGARDSRRPRTGAPEPPCLAGPQRGVHAHAAPGPSSGE 355
G G R SR P CL GP+RG A + G SS +
Sbjct: 675 GRRGRRSSRGAEDQTPVVVCLVGPRRGTTAPGSHGDSSND 714
>SB_10081| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-38)
Length = 424
Score = 31.9 bits (69), Expect = 0.52
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Frame = -1
Query: 453 SRRPRTGAPEPPCLAGPQRGVHA---HAAPGPSSGE*GWYSMTAGVSTLVRLSIQKCIGR 283
+ RP PP +H +AAPG S G S+ V V S+ + +GR
Sbjct: 16 ANRPSPRNHYPPLTQNSPPPLHLWDHYAAPGQSVGRSVGRSVGRSVGRSVGRSVGRSVGR 75
Query: 282 FFLTSVMQASFFKVLLIFY*DL-KLVAIV-TVPILHKIVATKHDNTDINRIIMDISI 118
L ++ F V+LI L +V I+ V ++ + +T+ +T N ++ ++++
Sbjct: 76 SCLDLKLKMDLFLVVLIALQFLVSIVGIIGNVSVIRVVWSTRSMHTTTNYLLANLAL 132
>SB_13481| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +1
Query: 340 RVPSSLSAGRARGRVCVDAALGARKAWRLRCTGSRPSTVPR 462
RVP+ + AGR RG D L R R T S TVP+
Sbjct: 72 RVPTLMRAGRIRGPTGHDTILWMANRRRRRSTASTAPTVPK 112
>SB_6891| Best HMM Match : Bac_chlorC (HMM E-Value=3.7)
Length = 433
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 404 GPARHGGSGAPVRGRRLSLAPPSPHTPTLRASAVTAV 514
G R GGS AP RG PP P+ R+ A+T++
Sbjct: 372 GGRRKGGSSAPPRGGTAERPPPRQSAPS-RSMAITSL 407
>SB_54540| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=2.2)
Length = 558
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/65 (32%), Positives = 26/65 (40%)
Frame = -1
Query: 510 AVTAEARNVGVCGEGGARDSRRPRTGAPEPPCLAGPQRGVHAHAAPGPSSGE*GWYSMTA 331
A+ E + VGV G + T P + P + VHA A P G G A
Sbjct: 469 AINTETKPVGVHNMAGGHPRVQHATDHAPPRRQSAPAK-VHAEGAAAPDRGGAGAVPAAA 527
Query: 330 GVSTL 316
G STL
Sbjct: 528 GHSTL 532
>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 29.1 bits (62), Expect = 3.7
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Frame = -1
Query: 645 SPSAAVLSK-VSGVTERAAARLAMVGCGGSDPTSTYMVSSCLRACTAVTAEARNVGVCGE 469
+PS+ + S V GV ++ V S+P +T S LR T+ + +
Sbjct: 498 TPSSGIYSMPVLGVPPASSG--IPVSISTSNPNATSPRPSILRKRTSEGLRKPTIVPYND 555
Query: 468 GGARDSRRPRTGAP--EPPCLAGPQRGVHAHAAPGPSSGE 355
GGA S+ + G+P + L+ PQ G ++ P + +
Sbjct: 556 GGAPSSQAEKPGSPRSDTTTLSAPQSGQNSPKPPSDAGSQ 595
>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
Length = 1153
Score = 29.1 bits (62), Expect = 3.7
Identities = 27/105 (25%), Positives = 41/105 (39%)
Frame = +2
Query: 350 PHSPLDGPGAACAWTPRWGPARHGGSGAPVRGRRLSLAPPSPHTPTLRASAVTAVQARRQ 529
P SP P A+ A +P H S AP + P P T+ + V+ A +
Sbjct: 337 PPSPNRSPAASPAPSPSAVKPFHPVSSAP-SAIKFPAKPNVPAPGTIMPAPVSHPVASPK 395
Query: 530 DDTMYVEVGSEPPQPTIASLAAARSVTPDTLLRTAALGLHHTPMV 664
V P +PT + + + ++ TAA LH T +V
Sbjct: 396 VAQSPVRTVQVPGKPTPSVTTTLANQSKPLVITTAAASLHQTKLV 440
>SB_53159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1540
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -1
Query: 507 VTAEARNVGVCGEGGARDSRRPRTGAPEPPCL 412
V ARNV GE G R R + G P PP L
Sbjct: 155 VKVTARNVVGYGETGTRTIRTRKQGPPSPPFL 186
>SB_21353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +2
Query: 419 GGSGA--PVRGRRLSLAPPSPH-TPTLRASAVTAVQARR 526
GG G PV G LS+ PP H TPT AS VQ+ R
Sbjct: 501 GGRGLVLPVGGPHLSVCPPQTHTTPTAPASIGGDVQSFR 539
>SB_18392| Best HMM Match : DUF1635 (HMM E-Value=5.3)
Length = 178
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -1
Query: 486 VGVCGEGGARDSRRPRT--GAPEPPCLAGPQRGVHAHAAPGPSSGE*GWYS 340
+G GEG A ++ P + G E + P GV A GPS+ W S
Sbjct: 116 LGRLGEGVAMETEIPTSTVGVAETSAVTAPVNGVVDGVANGPSASSLSWQS 166
>SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +3
Query: 426 PVHRF-AAVDCPSRRPHRTHRHYAPPPLPRCRLGGKTTPC 542
P+HR S PH HRH+ PPP TPC
Sbjct: 57 PLHRHHPPPPASSSFPHSLHRHHPPPPAS----SSSPTPC 92
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3
Query: 426 PVHRFAAVDCPSRRPHRTHRHYAPPP 503
P + C PH HRH+ PPP
Sbjct: 16 PASSSSPTPCYGITPHPLHRHHLPPP 41
>SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
Length = 515
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 456 DSRRPRTGAPEPPCLAGPQRGVHAHAAPGPSSGE*GWYSM 337
D RRP P+P L P RG P+SG+ ++M
Sbjct: 263 DPRRPVNDGPKPGILGSPPRGPDNLPLAPPTSGDMDAFNM 302
>SB_15118| Best HMM Match : IncA (HMM E-Value=0.44)
Length = 835
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 486 VGVCGEGGARDSRRPRTGAPEPPCLAGPQ-RGVHAHA 379
+G GG R + PR GA EPP P+ RG A A
Sbjct: 24 LGADCRGGGRSAVPPRGGADEPPFRLPPEIRGAQALA 60
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,278,224
Number of Sequences: 59808
Number of extensions: 447711
Number of successful extensions: 1437
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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