Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20725
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93379-3|CAB07590.1|  282|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    31   0.61 
Z22174-1|CAA80128.1|  732|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U40945-6|AAS80346.1|  437|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U40945-5|AAS80344.1|  617|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AL022289-1|CAA18372.1|  354|Caenorhabditis elegans Hypothetical ...    29   4.3  
AF016655-12|AAK31438.3| 1143|Caenorhabditis elegans Guanylyl cyc...    29   4.3  
Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z48009-6|CAA88079.1|  329|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF039720-5|AAB96696.1|  408|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z99280-2|CAE18017.1|  129|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z67990-1|CAA91932.1|  316|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U58763-1|AAK68877.2|  559|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot...    27   9.9  

>Z93379-3|CAB07590.1|  282|Caenorhabditis elegans Hypothetical
           protein F21H7.4 protein.
          Length = 282

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +3

Query: 456 PSRRPHRTHRHYAPPPLPRCRLG 524
           P R PHR HR   PPP P C  G
Sbjct: 83  PHRPPHRPHRPPRPPPRPECDEG 105


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = +2

Query: 461  APPSPHTPTLRASAVTAVQARRQDDTMYVEVGSEPPQPTIASLAAARSVTP 613
            AP  PH PT R + V   Q          EVG   P+ T A+  A  S  P
Sbjct: 1000 APTPPHVPTGRPTTVGQAQPPASSSRRVTEVGPPAPRTTEAAPPAPSSQPP 1050


>Z22174-1|CAA80128.1|  732|Caenorhabditis elegans Hypothetical
           protein K01B6.1 protein.
          Length = 732

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 422 GSGAPVRGRRLSLAPPSPHTPTLRASAVTAVQARR 526
           G G P++GR    +P SP  P  R S  +++ +RR
Sbjct: 231 GRGRPMQGRSSPKSPTSPTQPGRRGSQASSLPSRR 265


>U40945-6|AAS80346.1|  437|Caenorhabditis elegans Hypothetical
           protein F10D7.5c protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 447 RPRTGAPEPPCLAGPQRGVHAHAAP 373
           RPR  AP PP +A P R   A  +P
Sbjct: 17  RPRRNAPPPPIIAVPPRPAPARTSP 41


>U40945-5|AAS80344.1|  617|Caenorhabditis elegans Hypothetical
           protein F10D7.5a protein.
          Length = 617

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 447 RPRTGAPEPPCLAGPQRGVHAHAAP 373
           RPR  AP PP +A P R   A  +P
Sbjct: 197 RPRRNAPPPPIIAVPPRPAPARTSP 221


>AL022289-1|CAA18372.1|  354|Caenorhabditis elegans Hypothetical
           protein ZK1225.1 protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 263 ITEVKKNLPMHFWIDKRTSVLTPAVIE 343
           I+EV K  PM +W D   S++ P V+E
Sbjct: 190 ISEVLKEYPMVWWNDAHFSMVEPTVVE 216


>AF016655-12|AAK31438.3| 1143|Caenorhabditis elegans Guanylyl cyclase
            protein 19 protein.
          Length = 1143

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
 Frame = +2

Query: 296  FWIDKRTSVLTPAVIE--YHPHSPLDGPGAACAWTPRWGPARHG-GSGAPVRGRRLSLAP 466
            FW+ +R +          Y         G++   TP   P  H   + +PVR R+    P
Sbjct: 1043 FWVFERNNQFMGVSSNSGYQSDKKATNNGSSPESTPPSTPPMHEVKANSPVRHRK----P 1098

Query: 467  PSPHTPTLRASAVTAV-QARRQD 532
            PSP +PTL   +V+ + +A+ +D
Sbjct: 1099 PSPSSPTLSKRSVSPIMEAKARD 1121


>Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical
           protein F42G4.3a protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 431 APVRGRRLSLAPPSPHTPTLRASAVTAVQAR 523
           AP R    + APP P  PT+ ASA+    AR
Sbjct: 29  APRRNNHPAPAPPKPSRPTVDASALQHAAAR 59


>Z48009-6|CAA88079.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.8 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 17  LNLERCISFLLLENLDHLDFKIGLIIVFLTVF 112
           ++L +C S L ++ L  L+F+I  IIV + VF
Sbjct: 1   MSLTKCASKLEIDRLISLNFRINQIIVLIPVF 32


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
 Frame = -1

Query: 600 RAAARLAMVGCGGSDPTSTYMVSSCLRACTAVTAEARNVGVCGEGGAR---DSRRPRTGA 430
           +A +R    G G S    +  + S   A  A T  +      GE  +    D+  P T  
Sbjct: 640 QAGSRAPSAGPGPSATPDSSTIPSASAAADAQTTTSSETSTPGEPTSSTPSDTPAPSTSV 699

Query: 429 PEPPCLAGPQRGVHAHAAPGP 367
           P P  +  PQ        PGP
Sbjct: 700 PPPTSVQPPQPQQPPQGPPGP 720


>U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical
           protein F56C9.10b protein.
          Length = 1031

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 450 DCPSRRPHRTHRHYAPPPLP 509
           D P+  P + H+  APPP+P
Sbjct: 152 DAPAAPPRKPHQRSAPPPIP 171


>U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical
           protein F56C9.10a protein.
          Length = 1028

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 450 DCPSRRPHRTHRHYAPPPLP 509
           D P+  P + H+  APPP+P
Sbjct: 149 DAPAAPPRKPHQRSAPPPIP 168


>AF039720-5|AAB96696.1|  408|Caenorhabditis elegans Hypothetical
           protein F33D11.2 protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
 Frame = +2

Query: 389 WTPRWGPARHGGSGAPVRGRRLSLA----PPSPH--TPTLRASAVTAVQARRQDDTMYVE 550
           W   W    HGG+ +P        A    PPSP   TP L  +    +  R+Q  T  +E
Sbjct: 48  WFTIW---EHGGNKSPDSRTEPETAITPLPPSPAPVTPVLENAKPRTI--RKQKSTAEIE 102

Query: 551 VGSEPPQPTI 580
           + S+P +P I
Sbjct: 103 LDSKPAEPKI 112


>Z99280-2|CAE18017.1|  129|Caenorhabditis elegans Hypothetical
           protein Y57G11B.6 protein.
          Length = 129

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 587 LAAARSVTPDTLLRTAALGLHHTPMVAPTSSSECWYR 697
           + A  S  P  L R+  L + HTPM  P  S++C +R
Sbjct: 1   MGAGVSGEPVYLTRSTML-ISHTPMAHPPQSTQCTFR 36


>Z67990-1|CAA91932.1|  316|Caenorhabditis elegans Hypothetical
           protein F02D10.1 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = -1

Query: 489 NVGVCGEGGARDSRRPRTGAPEPPCLAGPQRGVHAHAAPGPSSG 358
           N G  G+G A     P T  P  PC AGP         PG   G
Sbjct: 142 NPGASGKGAAAPCE-PSTPPPCQPCPAGPPGPPGPDGTPGEPGG 184


>U58763-1|AAK68877.2|  559|Caenorhabditis elegans Hypothetical
           protein F10C5.2 protein.
          Length = 559

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -2

Query: 455 TVDGREPVHRSRHALRAPSAASTHTRPLARPAESED 348
           T  G  P    R A R  + + T TR    P ESED
Sbjct: 521 TASGMTPSEYMRKARRIDATSKTPTRKSRHPTESED 556


>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
           3, isoform b protein.
          Length = 1178

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +2

Query: 257 ACITEVKKNLPMHFWIDKRTSVLTPAVIEYHPH-SPLDGPGAACAWTPRW 403
           A +  VKK LP   W+D +  +     I++  H S L        W PRW
Sbjct: 792 ASVVIVKKQLPRRHWLDFQVDLKR---IDFDKHRSRLKPKMRLMRWIPRW 838


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,258,813
Number of Sequences: 27780
Number of extensions: 338089
Number of successful extensions: 1418
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)