Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20725
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    24   1.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.7  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 344 YHPHSPLDGPGAACAWT 394
           Y+P  PL   G+ C WT
Sbjct: 57  YNPRYPLPYSGSKCTWT 73


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 130 HYNSINIRVVVFCGNDFVQNWYCDN 204
           ++N +N R++    ND + N  C N
Sbjct: 561 NFNEVNFRILGANVNDLIMNTRCAN 585


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 560 EPPQPTIASLAAARSVTP 613
           EPP PT+ S     + TP
Sbjct: 182 EPPVPTVTSACVGSAYTP 199



 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 455 SLAPPSPHTPTLRASAVTAVQARRQDD 535
           S+ PP P  PT+ ++ V +     ++D
Sbjct: 177 SMDPPEPPVPTVTSACVGSAYTPLKED 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,278
Number of Sequences: 438
Number of extensions: 4050
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)