Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20725
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52710.1 68414.m05954 cytochrome c oxidase-related similar to...    30   1.3  
At2g26180.1 68415.m03144 calmodulin-binding family protein low s...    30   1.7  
At3g16785.1 68416.m02143 phospholipase D zeta1 / PLDzeta1 (PLDP1...    29   3.0  
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea...    29   3.0  
At2g38280.2 68415.m04702 AMP deaminase, putative / myoadenylate ...    28   5.3  
At2g38280.1 68415.m04701 AMP deaminase, putative / myoadenylate ...    28   5.3  
At2g29060.1 68415.m03532 scarecrow transcription factor family p...    28   5.3  
At2g17600.1 68415.m02036 DC1 domain-containing protein contains ...    28   5.3  
At4g32640.1 68417.m04646 sec23/sec24 transport protein-related         28   7.0  
At1g70620.2 68414.m08137 cyclin-related contains weak similarity...    28   7.0  
At1g70620.1 68414.m08138 cyclin-related contains weak similarity...    28   7.0  

>At1g52710.1 68414.m05954 cytochrome c oxidase-related similar to
           SP|P00428 Cytochrome c oxidase polypeptide Vb (EC
           1.9.3.1) (VI) [Bovine] {Bos taurus}
          Length = 90

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 296 FWIDKRTSVLTPAVIEYHPHSPLDGPG 376
           FW+DK  S   P   +Y  H P DG G
Sbjct: 57  FWLDKGKSFECPVCSQYFEHGPPDGHG 83


>At2g26180.1 68415.m03144 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 416

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/91 (24%), Positives = 34/91 (37%)
 Frame = +2

Query: 314 TSVLTPAVIEYHPHSPLDGPGAACAWTPRWGPARHGGSGAPVRGRRLSLAPPSPHTPTLR 493
           +++ T + I Y      D      +W  RW  AR   +         +  PP PH     
Sbjct: 220 SNLKTNSSISYLKSQEFDKNSWGWSWLERWMAARPWETRLMDTVDTAATPPPLPHKHLKS 279

Query: 494 ASAVTAVQARRQDDTMYVEVGSEPPQPTIAS 586
                 VQ RR + T    V ++PP   ++S
Sbjct: 280 PETADVVQVRRNNVT--TRVSAKPPPHMLSS 308


>At3g16785.1 68416.m02143 phospholipase D zeta1 / PLDzeta1 (PLDP1)
           identical to phospholipase D zeta1 [Arabidopsis
           thaliana] GI:15723315, SP|Q9LRZ5 Phospholipase D p1 (EC
           3.1.4.4) (AtPLDp1) (Phospholipase D1 PHOX and PX
           containing domain) (Phospholipase D zeta 1) (PLDzeta1)
           {Arabidopsis thaliana}; supported by cDNA gi:15723314;
           non-consensus splice site (GC) at the beginning of first
           intron.
          Length = 1096

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 626 SVRCRG*RSARPPDWRWWAAGAPTRPPRTWC 534
           S+R R   SA+  DW      A  RPP  WC
Sbjct: 319 SIRIRAKNSAKVKDWVASINDAALRPPEGWC 349


>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to WDR protein, form B (GI:14970593) [Mus
           musculus]
          Length = 1589

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 374 GAACAWTPRWGPARHGGSGAPVRGRRLSLAPP 469
           G+A  WTPR     HG SG  ++G  L + PP
Sbjct: 548 GSAIIWTPR-SRKFHGKSGRWMKGYHLKVPPP 578


>At2g38280.2 68415.m04702 AMP deaminase, putative / myoadenylate
           deaminase, putative similar to SP|P15274 AMP deaminase
           (EC 3.5.4.6) (Myoadenylate deaminase) {Saccharomyces
           cerevisiae}; contains Pfam profile PF00962:
           Adenosine/AMP deaminase
          Length = 839

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 371 PGAACAWTPRWGPAR-HGGSGAPVRGRRLSLAPPSPHTPTLRASAVTAVQARRQDDTM 541
           PG     TP  G A  HG S   +R     + P SP +P   ASA  +V+    DD +
Sbjct: 108 PGLPRLHTPSEGRASVHGASS--IRKTGSFVRPISPKSPVASASAFESVEESDDDDNL 163


>At2g38280.1 68415.m04701 AMP deaminase, putative / myoadenylate
           deaminase, putative similar to SP|P15274 AMP deaminase
           (EC 3.5.4.6) (Myoadenylate deaminase) {Saccharomyces
           cerevisiae}; contains Pfam profile PF00962:
           Adenosine/AMP deaminase
          Length = 839

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 371 PGAACAWTPRWGPAR-HGGSGAPVRGRRLSLAPPSPHTPTLRASAVTAVQARRQDDTM 541
           PG     TP  G A  HG S   +R     + P SP +P   ASA  +V+    DD +
Sbjct: 108 PGLPRLHTPSEGRASVHGASS--IRKTGSFVRPISPKSPVASASAFESVEESDDDDNL 163


>At2g29060.1 68415.m03532 scarecrow transcription factor family
            protein 
          Length = 1336

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 488  LRASAVTAVQARRQDDTMYVEVGSEPPQPTIASLAAARSVTPDTLLRTAALGLHHTP 658
            +R + V AV A  +   +  E GSE   P  A L   R++ PD  +     G  + P
Sbjct: 1154 IRPNEVLAVNAGLRLKNLQDETGSEENCPRDAVLKLIRNMNPDVFIHAIVNGSFNAP 1210


>At2g17600.1 68415.m02036 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 580

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 459 SRRPHR-THRHYAPPPLPRCRLGGKT 533
           +R PHR +H  + PP  P CR+  KT
Sbjct: 197 TRHPHRLSHTPFLPPTTPSCRVCYKT 222


>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
          Length = 1069

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 350 PHSPLDGPGAACAWTPRWGPARHGGSGAPVRGRRLSLAPPSP 475
           P  P+  P A+ +  P +GP+    +G P   R ++   P P
Sbjct: 135 PGGPVAQPAASSSGFPAFGPSGSVAAGPPPGSRPMAFGSPPP 176


>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 884

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/53 (37%), Positives = 22/53 (41%)
 Frame = +2

Query: 344 YHPHSPLDGPGAACAWTPRWGPARHGGSGAPVRGRRLSLAPPSPHTPTLRASA 502
           +HPHSP   P     W P   P+ H   G P      S A P PH P   A A
Sbjct: 54  HHPHSPSPPPPPPPQWGP---PSPHYPQGQPYS----SPAYP-PHQPPFNAGA 98


>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 897

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/53 (37%), Positives = 22/53 (41%)
 Frame = +2

Query: 344 YHPHSPLDGPGAACAWTPRWGPARHGGSGAPVRGRRLSLAPPSPHTPTLRASA 502
           +HPHSP   P     W P   P+ H   G P      S A P PH P   A A
Sbjct: 54  HHPHSPSPPPPPPPQWGP---PSPHYPQGQPYS----SPAYP-PHQPPFNAGA 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,297,365
Number of Sequences: 28952
Number of extensions: 306027
Number of successful extensions: 1073
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)