Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20724
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    64   3e-11
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    43   4e-05
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    27   3.8  
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   6.7  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   6.7  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   6.7  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   8.8  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    25   8.8  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
 Frame = +1

Query: 247 EYFELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAA 426
           E  E  +  K ++  VPGAFTP CS + +PGY+ N  +  + G++ I  V+VND +V  A
Sbjct: 20  EVVEFPSQGKFIIVGVPGAFTPPCS-SQVPGYIANEKQFAAKGISGIYVVAVNDVFVTKA 78

Query: 427 WGAQHN--TKGKVRMLADPSGNFIKALD 504
           W    +   +  V  +AD +G F KA D
Sbjct: 79  WKKSFDGGEQSGVHFVADWNGEFTKAFD 106



 Score = 31.9 bits (69), Expect = 0.10
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +3

Query: 525 LGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 638
           LG  RSKR++ V+ + KV  + +E + T +  S ADK+
Sbjct: 115 LGPLRSKRYAAVVENGKVVKVFIENEVTDVDISSADKV 152


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 27/82 (32%), Positives = 44/82 (53%)
 Frame = +1

Query: 256 ELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGA 435
           ++TA K +V+FA P A TPGC+K    G+  N  K+++    E++ +S +      A+  
Sbjct: 69  DITANKGLVIFAYPKASTPGCTKQGC-GFRDNYPKIQASDY-EVLGLSFDTSKAQKAFKD 126

Query: 436 QHNTKGKVRMLADPSGNFIKAL 501
           + N      +L+DP G  IK L
Sbjct: 127 KQNF--PYHLLSDPKGELIKKL 146


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 302 APGTANNTTFFPAVNSKYSLY*RENLRINQQQAADP 195
           +P +     F+P   +K+S Y   N   + QQA  P
Sbjct: 72  SPSSKKKNIFYPIARAKHSFYFNHNWSSDLQQANSP 107


>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -3

Query: 79  VEVFTMVVTLLIIYFVISIV 20
           V +FT V+T++I+YF  S++
Sbjct: 117 VLIFTYVMTVIIVYFSFSLI 136


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -3

Query: 79  VEVFTMVVTLLIIYFVISIV 20
           V +FT V+T++I+YF  S++
Sbjct: 117 VLIFTYVMTVIIVYFSFSLI 136


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -1

Query: 378 NSIRLQFICVLYVSRQVCFRTSRG 307
           NSI+  F+C++Y+S+ + ++   G
Sbjct: 522 NSIKSPFLCLIYISKDMEYKLLHG 545


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +1

Query: 337 GYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQH-----NTKGKVRMLADPS 480
           GY+ +++ L  +G  + +   V++P   A W  +H     N +  + +L D S
Sbjct: 329 GYLHSSELLYPEGTEQQIISLVDEPNQNALWIIEHEHSQDNNRSNIELLKDGS 381


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 70  KLLPSNVSHRVFDYPWHYRIRQS 138
           KLLP N +  +    WH R+R++
Sbjct: 67  KLLPQNYNFEIHKTIWHIRLRKA 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,076,131
Number of Sequences: 5004
Number of extensions: 66152
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)