Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20724
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048 101 8e-22
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 96 3e-20
06_03_0811 + 24830496-24831194 95 7e-20
02_01_0691 - 5167260-5167937 88 8e-18
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 33 0.32
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 31 0.99
11_06_0265 - 21788531-21789798,21789914-21789947 30 1.7
07_01_0380 - 2834080-2834451,2835945-2836130 29 3.0
06_01_0861 + 6527279-6527582,6527619-6527719,6527817-6528042,652... 29 3.0
06_01_0671 - 4899611-4899829,4900870-4901448 29 3.0
06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518 29 5.3
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877... 28 7.0
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 7.0
>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
Length = 162
Score = 101 bits (241), Expect = 8e-22
Identities = 46/83 (55%), Positives = 58/83 (69%)
Frame = +1
Query: 259 LTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQ 438
L AGKKVVLF VPGAFTP CS H+PG++ A++LK+ GV +I+ VSVNDP+VM AW
Sbjct: 32 LAAGKKVVLFGVPGAFTPTCSNQHVPGFINQAEQLKAKGVDDILLVSVNDPFVMKAWAKS 91
Query: 439 HNTKGKVRMLADPSGNFIKALDL 507
+ V+ LAD G + KAL L
Sbjct: 92 YPENKHVKFLADGLGTYTKALGL 114
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 95.9 bits (228), Expect = 3e-20
Identities = 44/106 (41%), Positives = 62/106 (58%)
Frame = +1
Query: 268 GKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT 447
GKKVV+F +PGA+T CS+ H+P Y N DKLK+ GV ++CVSVNDPY + W +
Sbjct: 70 GKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWAEKLQA 129
Query: 448 KGKVRMLADPSGNFIKALDLAPICRRSEVSAPKGSRWSSLTARSKI 585
K + D G+F K+LDL + + + + RWS+ KI
Sbjct: 130 KDAIEFYGDFDGSFHKSLDL-EVDLSAALLGRRSHRWSAFVDDGKI 174
>06_03_0811 + 24830496-24831194
Length = 232
Score = 94.7 bits (225), Expect = 7e-20
Identities = 42/82 (51%), Positives = 58/82 (70%)
Frame = +1
Query: 256 ELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGA 435
+LTAGKKVVLFAVPGAFTP C++ H+PG+V A +L++ GV + CVSVND +VM AW
Sbjct: 99 DLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKE 158
Query: 436 QHNTKGKVRMLADPSGNFIKAL 501
+V +L+D +G +A+
Sbjct: 159 SLGVGDEVLLLSDGNGELARAM 180
>02_01_0691 - 5167260-5167937
Length = 225
Score = 87.8 bits (208), Expect = 8e-18
Identities = 38/58 (65%), Positives = 46/58 (79%)
Frame = +1
Query: 256 ELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAW 429
ELTAG+K VLFAVPGAFTP CS+ HLPG+++ A +L + GV I CVSVND +VM AW
Sbjct: 91 ELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAW 148
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 116 GITAFANRASARALHISQLSMAPIKVGDQLPAADLFEDSPAN 241
G+ A RA+ R+ + +A I VGD+LP A L PA+
Sbjct: 40 GVRAAGARAARRSAASASTVVATIAVGDKLPDATLSYFDPAD 81
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 32.7 bits (71), Expect = 0.32
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +3
Query: 480 RQLHQGSGPGTNLPPLGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 638
R + +G P T PL G S F+ +I S +Q +V+ DGT SC + D I
Sbjct: 442 RWIAEGFIPETRGIPLEGVGSAYFNELINRSMIQPADVQYDGTVQSCRVHDMI 494
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 31.1 bits (67), Expect = 0.99
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +1
Query: 277 VVLFAVPGAFTPGCSK--THLPGYVQNADKLKSDGVAEIVC--VSVNDPYVMAAWGAQHN 444
V+LF+ PG FTP C+ + GY + DK + + I C V + ++ +
Sbjct: 68 VILFSHPGDFTPVCTTELAAMAGYAKEFDK-RGVKLLGISCDDVQSHKDWIKDIEAYKPG 126
Query: 445 TKGKVRMLADPSGNFIKALDL 507
+ ++ADPS IK L++
Sbjct: 127 NRVTYPIMADPSREAIKQLNM 147
>11_06_0265 - 21788531-21789798,21789914-21789947
Length = 433
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/80 (31%), Positives = 35/80 (43%)
Frame = +1
Query: 310 PGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNF 489
P + TH G +Q + + S+G E+VC D Y MA + A + A S +
Sbjct: 147 PSPTATHSCGAIQRSVPV-SNGDGEVVCTIHADEYAMALYKAVLSAPPN----AGSSSSS 201
Query: 490 IKALDLAPICRRSEVSAPKG 549
LDL C + VS KG
Sbjct: 202 SSELDLGSSCIVAAVSQRKG 221
>07_01_0380 - 2834080-2834451,2835945-2836130
Length = 185
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +3
Query: 420 GGLGSSAQHQRKGAYASRSQRQLHQGSGPGTNLPPLGGFRSKRFSMVIVDSKVQDLNVEP 599
GG+ ++A A +S S H GSG G+ PP S R + + +N P
Sbjct: 100 GGVSTAAARHCDVAGSSSS----HSGSGSGSATPPRPALVSPRAGLQAAAAAAPTMNQPP 155
Query: 600 DGTGLS 617
+GLS
Sbjct: 156 AASGLS 161
>06_01_0861 +
6527279-6527582,6527619-6527719,6527817-6528042,
6528132-6528475,6528624-6528989,6529080-6529347,
6529479-6529696
Length = 608
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 289 AVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAW-GAQHNT 447
A+ G P C H+ + K +S V V + YV+A W G+ H++
Sbjct: 140 ALDGTHIPACVPMHMQDRFRGRKKFQSQNVLAAVDFDLRFLYVLAGWEGSAHDS 193
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 268 GKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVND 408
G+ VV++ P TPGC+K + + +K K G AE++ +S +D
Sbjct: 144 GRPVVVYFYPADETPGCTK-QACAFRDSYEKFKKAG-AEVIGISGDD 188
>06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518
Length = 524
Score = 28.7 bits (61), Expect = 5.3
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +1
Query: 271 KKVVLFAVP---GAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQH 441
+K + F P GAF K P Y + D L GV E++ SV+ P + A H
Sbjct: 167 EKTMFFVNPSSAGAFDGNGEKKIRP-YARKDDFLLP-GVVEVIIKSVSSPAIAPACTRTH 224
Query: 442 NTKGKVRMLADPSGNF 489
N V +A + NF
Sbjct: 225 NVPAVVFSVAGYTDNF 240
>08_02_1402 -
26786011-26786128,26786263-26786516,26787505-26787732,
26788920-26789759
Length = 479
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1
Query: 630 RRENKTGQCHRAPHSDLGPCCQR*PSRT 547
RRE +T H PHSDL P R P RT
Sbjct: 187 RREAETAHPHTQPHSDLSP---RTPRRT 211
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 429 GSSAQHQRKGAYASRSQRQLHQGSGPGTNLPPLGGF 536
GSS Q + Q HQG P +N+PP+GGF
Sbjct: 597 GSSNQMMPQMPQHLIGMNQTHQG--PPSNMPPMGGF 630
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,228,470
Number of Sequences: 37544
Number of extensions: 512126
Number of successful extensions: 1287
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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