Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20724
(756 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44) 85 4e-17
SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_42557| Best HMM Match : GAD (HMM E-Value=1.4) 30 2.3
SB_8438| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_13381| Best HMM Match : Asparaginase (HMM E-Value=6e-09) 29 4.1
SB_13198| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10) 28 9.4
SB_20030| Best HMM Match : NTR (HMM E-Value=0.6) 28 9.4
>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
Length = 246
Score = 85.4 bits (202), Expect = 4e-17
Identities = 45/104 (43%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Frame = +1
Query: 259 LTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQ 438
L AGK VVLFA+PGAFTP CS THLP Y + A K+ GV +I+C+SVND +VM +W A
Sbjct: 31 LFAGKTVVLFALPGAFTPTCSSTHLPRYNELAPVFKAQGVDDIICLSVNDTFVMNSWAAD 90
Query: 439 HNTKGKVRMLADPSGNFIKALDLAPICRRSEVSAPKGS-RWSSL 567
+ + + D +G F + + + + +S++ K S R+S L
Sbjct: 91 QKAE-NITFIPDGNGEFSEGMGM--LVDKSDLGFGKRSWRYSML 131
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 483 QLHQGSGPGTNLPPLG-GFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLAD 632
+ +G G + LG G RS R+SM++ D ++ + +EPD G ++D
Sbjct: 105 EFSEGMGMLVDKSDLGFGKRSWRYSMLVKDGVIEKMFIEPDVPGDPFKVSD 155
>SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/40 (57%), Positives = 32/40 (80%)
Frame = +3
Query: 519 PPLGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 638
P LG RSKR++M++ D V+ L+VEPDGTGL+CSL++ I
Sbjct: 94 PFLGNIRSKRYAMLVEDGVVKQLHVEPDGTGLTCSLSNSI 133
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +1
Query: 361 LKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGK 456
+KS GV + C++VNDP+VM+AWG + +GK
Sbjct: 53 IKSKGVDVVACIAVNDPFVMSAWGEANGCQGK 84
>SB_42557| Best HMM Match : GAD (HMM E-Value=1.4)
Length = 366
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 301 AFTPGCSKTHLPGYVQNADKLKSDGVAE-IVCVSVN 405
A PG S+ L + + A +KSD +A+ IVCV +N
Sbjct: 84 ASIPGFSQEQLQAWARRAKAVKSDSLADAIVCVQLN 119
>SB_8438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +3
Query: 435 SAQHQRKGAYASRSQRQLHQGSGPGTNLPPLGGFRSKRFSMVIVDSKVQDLNVEPDGTGL 614
S + + G+ + + S PG N+ P F + S +D +QD+++ PD T +
Sbjct: 7 SCEVGKNGSLCKHHTLRARESSNPGVNVLPDSDFDDQDASQSYLDETIQDVSM-PDTTSV 65
Query: 615 SCSLAD 632
+ D
Sbjct: 66 TGDAED 71
>SB_13381| Best HMM Match : Asparaginase (HMM E-Value=6e-09)
Length = 231
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +2
Query: 86 MFLTGSSIIRGITAFANRASARALHISQLSMAPIKVGDQLPAADLFEDSPANKVNIL 256
M G ++ G + ASA + LS I G QLP DL D+ N + +
Sbjct: 18 MRFDGFVVLHGSDTMSYSASALSFMFENLSKPIIFTGSQLPIGDLRTDAKENLITAI 74
>SB_13198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 444 VVLSSPSRHHIRVINRHAHYFSNSIRLQFICVLYVSRQV 328
VV P HI + H H+ R+QF +LYV +
Sbjct: 621 VVQLEPKFDHITPVLTHLHWLPVEFRIQFKILLYVHHSI 659
>SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 453 KGAYASRSQRQLHQGSGPGTN-LPPLGGFRSKRFSMVIVDSKVQDLNVEPD 602
K Y+ R+Q Q G P SKRFS+ ++DS + + ++ D
Sbjct: 253 KFRYSGRTQHQARNNESVGVREQPSFDRVSSKRFSLRVLDSNRKSMLIDDD 303
>SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10)
Length = 597
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 410 GSLTDTHTISATPSDFSLSAFCTYPGKCVLEHPGVKAPGTAN 285
GSL + TI+++ +F+++A +PG + V P T N
Sbjct: 199 GSLVEIATINSSSLEFNVNASLRWPGGAAMTPRDVSQPVTKN 240
>SB_20030| Best HMM Match : NTR (HMM E-Value=0.6)
Length = 178
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 364 SVYLRSVRIPASVF*NIPG*RRPAPQII 281
SVY S +P +VF +PG R P P ++
Sbjct: 25 SVYKASELLPRTVFIRVPGGRCPCPHLL 52
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,755,063
Number of Sequences: 59808
Number of extensions: 530127
Number of successful extensions: 1227
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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