Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20724
(756 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g65980.1 68414.m07486 peroxiredoxin type 2, putative strong s... 105 4e-23
At1g60740.1 68414.m06838 peroxiredoxin type 2, putative strong s... 103 1e-22
At1g65970.1 68414.m07485 peroxiredoxin type 2, putative strong s... 103 2e-22
At3g52960.1 68416.m05838 peroxiredoxin type 2, putative similar ... 95 6e-20
At3g06050.1 68416.m00692 alkyl hydroperoxide reductase/thiol spe... 89 4e-18
At1g65990.1 68414.m07488 type 2 peroxiredoxin-related / thiol sp... 82 3e-16
At3g26060.1 68416.m03245 peroxiredoxin Q, putative similar to pe... 33 0.27
At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putati... 33 0.27
At3g02890.1 68416.m00284 PHD finger protein-related contains low... 31 1.1
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 30 1.9
At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing pro... 29 3.3
At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing pro... 29 3.3
At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family pr... 28 7.7
At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein ... 28 7.7
>At1g65980.1 68414.m07486 peroxiredoxin type 2, putative strong
similarity to type 2 peroxiredoxin [Brassica rapa subsp.
pekinensis] GI:4928472; contains Pfam profile: PF00578
AhpC/TSA (alkyl hydroperoxide reductase and
thiol-specific antioxidant) family
Length = 162
Score = 105 bits (251), Expect = 4e-23
Identities = 46/83 (55%), Positives = 59/83 (71%)
Frame = +1
Query: 259 LTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQ 438
L AGKKV+LF VPGAFTP CS H+PG+++ A++LKS GV EI+C SVNDP+VM AWG
Sbjct: 32 LAAGKKVILFGVPGAFTPTCSMKHVPGFIEKAEELKSKGVDEIICFSVNDPFVMKAWGKT 91
Query: 439 HNTKGKVRMLADPSGNFIKALDL 507
+ V+ +AD SG + L L
Sbjct: 92 YPENKHVKFVADGSGEYTHLLGL 114
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 531 GFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 638
G RS+RF++++ D KV NVE G + S AD I
Sbjct: 124 GVRSRRFALLLDDLKVTVANVESGGE-FTVSSADDI 158
>At1g60740.1 68414.m06838 peroxiredoxin type 2, putative strong
similarity to type 2 peroxiredoxin [Brassica rapa subsp.
pekinensis] GI:4928472; contains Pfam profile: PF00578
AhpC/TSA (alkyl hydroperoxide reductase and
thiol-specific antioxidant) family
Length = 162
Score = 103 bits (248), Expect = 1e-22
Identities = 44/83 (53%), Positives = 59/83 (71%)
Frame = +1
Query: 259 LTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQ 438
+ AGKKV+LF VPGAFTP CS +H+PG++ A++LKS G+ EI+C SVNDP+VM AWG
Sbjct: 32 IAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKT 91
Query: 439 HNTKGKVRMLADPSGNFIKALDL 507
+ V+ +AD SG + L L
Sbjct: 92 YQENKHVKFVADGSGEYTHLLGL 114
>At1g65970.1 68414.m07485 peroxiredoxin type 2, putative strong
similarity to type 2 peroxiredoxin [Brassica rapa subsp.
pekinensis] GI:4928472; contains Pfam profile: PF00578
AhpC/TSA (alkyl hydroperoxide reductase and
thiol-specific antioxidant) family
Length = 162
Score = 103 bits (246), Expect = 2e-22
Identities = 44/83 (53%), Positives = 59/83 (71%)
Frame = +1
Query: 259 LTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQ 438
+ AGKKV+LF VPGAFTP CS +H+PG++ A++LKS G+ EI+C SVNDP+VM AWG
Sbjct: 32 IAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKT 91
Query: 439 HNTKGKVRMLADPSGNFIKALDL 507
+ V+ +AD SG + L L
Sbjct: 92 YPENKHVKFVADGSGEYTHLLGL 114
>At3g52960.1 68416.m05838 peroxiredoxin type 2, putative similar to
type 2 peroxiredoxin [Brassica rapa subsp. pekinensis]
GI:4928472; contains Pfam profile: PF00578 AhpC/TSA
(alkyl hydroperoxide reductase and thiol-specific
antioxidant) family
Length = 234
Score = 94.7 bits (225), Expect = 6e-20
Identities = 47/105 (44%), Positives = 63/105 (60%)
Frame = +1
Query: 259 LTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQ 438
LTAGKK +LFAVPGAFTP CS+ H+PG+V A +L+S G+ I C+SVND +VM AW
Sbjct: 102 LTAGKKTILFAVPGAFTPTCSQKHVPGFVSKAGELRSKGIDVIACISVNDAFVMEAWRKD 161
Query: 439 HNTKGKVRMLADPSGNFIKALDLAPICRRSEVSAPKGSRWSSLTA 573
+V +L+D +G F L + R V SR ++ A
Sbjct: 162 LGINDEVMLLSDGNGEFTGKLGVELDLRDKPVGLGVRSRRYAILA 206
>At3g06050.1 68416.m00692 alkyl hydroperoxide reductase/thiol
specific antioxidant (AhpC/TSA)/mal allergen family
protein identical to SP|Q9M7T0 Putative peroxiredoxin,
mitochondrial precursor {Arabidopsis thaliana}; similar
to thioredoxin peroxidase [Capsicum annuum] GI:18654477;
contains Pfam profile: PF00578 AhpC/TSA (alkyl
hydroperoxide reductase and thiol-specific antioxidant)
family
Length = 201
Score = 88.6 bits (210), Expect = 4e-18
Identities = 39/110 (35%), Positives = 61/110 (55%)
Frame = +1
Query: 256 ELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGA 435
++ GKKVV+F +PGA+T CS+ H+P Y + DK K+ G+ ++CVSVNDP+ + W
Sbjct: 69 DIFKGKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGIDSVICVSVNDPFAINGWAE 128
Query: 436 QHNTKGKVRMLADPSGNFIKALDLAPICRRSEVSAPKGSRWSSLTARSKI 585
+ K + D G F K+L L + + P+ RWS+ K+
Sbjct: 129 KLGAKDAIEFYGDFDGKFHKSLGLDKDL-SAALLGPRSERWSAYVEDGKV 177
>At1g65990.1 68414.m07488 type 2 peroxiredoxin-related / thiol
specific antioxidant / mal allergen family protein
similar to type 2 peroxiredoxin [Brassica rapa subsp.
pekinensis] GI:4928472; contains Pfam profiles PF00646:
F-box domain, PF00578: AhpC/TSA family
Length = 553
Score = 82.2 bits (194), Expect = 3e-16
Identities = 38/83 (45%), Positives = 57/83 (68%)
Frame = +1
Query: 259 LTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQ 438
L AGKKV+LF VPGAF P CS H+ G+++ A++LKS+GV EI+C+S +DP+++ A
Sbjct: 32 LAAGKKVILFGVPGAFPPTCSMNHVNGFIEKAEELKSNGVDEIICLSGDDPFMITACSEN 91
Query: 439 HNTKGKVRMLADPSGNFIKALDL 507
+ V+ + D SG +I+ L L
Sbjct: 92 KH----VKFVEDGSGEYIQLLGL 110
>At3g26060.1 68416.m03245 peroxiredoxin Q, putative similar to
peroxiredoxin Q [Sedum lineare] GI:6899842; contains
Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
reductase and thiol-specific antioxidant) family
Length = 216
Score = 32.7 bits (71), Expect = 0.27
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = +1
Query: 268 GKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT 447
GK VVL+ P TPGC+K + + +K K G AE++ +S +D A+ +++
Sbjct: 95 GKPVVLYFYPADETPGCTK-QACAFRDSYEKFKKAG-AEVIGISGDDSASHKAFASKY-- 150
Query: 448 KGKVRMLADPSGNFIK 495
K +L+D GN ++
Sbjct: 151 KLPYTLLSD-EGNKVR 165
>At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putative
identical to peroxiredoxin (Rehydrin homolog)
[Arabidopsis thaliana] SWISS-PROT:O04005; contains Pfam
profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase
and thiol-specific antioxidant) family
Length = 216
Score = 32.7 bits (71), Expect = 0.27
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +1
Query: 265 AGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAW----- 429
A VLF+ PG FTP C+ T L + A + GV +++ +S +D W
Sbjct: 29 ANSWTVLFSHPGDFTPVCT-TELGAMAKYAHEFDKRGV-KLLGLSCDDVQSHKDWIKDIE 86
Query: 430 GAQHNTKGKVRMLADPSGNFIKALDL 507
H +K ++ADP+ I L++
Sbjct: 87 AFNHGSKVNYPIIADPNKEIIPQLNM 112
>At3g02890.1 68416.m00284 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 963
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/75 (28%), Positives = 39/75 (52%)
Frame = -2
Query: 500 RALMKLPLGSASIRTFPLVLC*APQAAITYGSLTDTHTISATPSDFSLSAFCTYPGKCVL 321
R +++ G+ ++ + P C A + GS +D S S L++ C++ G +L
Sbjct: 4 RGRLEIQSGTCNVCSAPCSSCMHHNAEFS-GSKSDES--SDENSHGVLASQCSFNGDNLL 60
Query: 320 EHPGVKAPGTANNTT 276
GV APG+++NT+
Sbjct: 61 RSSGVNAPGSSHNTS 75
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 29.9 bits (64), Expect = 1.9
Identities = 25/81 (30%), Positives = 33/81 (40%)
Frame = +1
Query: 310 PGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNF 489
PGCSKT L NA + + C + YV NT + R LA PS F
Sbjct: 329 PGCSKTTLAKAAANAAQA---SFFSLSCAELFSMYVGEGEALLRNTFQRAR-LASPSIIF 384
Query: 490 IKALDLAPICRRSEVSAPKGS 552
D+ C+R + S+ S
Sbjct: 385 FDEADVV-ACKRGDESSSNSS 404
>At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing
protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
zinc finger-containing protein ZiGA4 GI:10441354 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 648
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 475 PSGNFIKALDLAPICRRSEVSAPKGSRWSS 564
P+ +F L P R SE+SAPK W+S
Sbjct: 368 PANSFAGNLGQQPTSRPSELSAPKNEGWAS 397
>At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing
protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
zinc finger-containing protein ZiGA4 GI:10441354 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 649
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 475 PSGNFIKALDLAPICRRSEVSAPKGSRWSS 564
P+ +F L P R SE+SAPK W+S
Sbjct: 368 PANSFAGNLGQQPTSRPSELSAPKNEGWAS 397
>At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family
protein similar to A. thaliana putative protein
F6I18.110, GenBank accession number 2980768
Length = 310
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 486 LHQGSGPGTNLPPLGGFRSKRFSMVIVDSKVQDL 587
L QG GPG P G KRFS +VD++ +
Sbjct: 86 LDQGKGPGFLRPEGGHGSGKRFSDDVVDNRCSSM 119
>At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 580
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 477 GIG*HTHLSFGVVLSSPSRHHIRVINRHAHYFSNSIR 367
G G + +FG +SSPSR+ N + HY S+ +R
Sbjct: 409 GFGNNVEETFGSYVSSPSRNSQMGQNMNQHYPSSPVR 445
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,345,413
Number of Sequences: 28952
Number of extensions: 373633
Number of successful extensions: 904
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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