Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20723
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7)             31   0.99 
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   1.3  
SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.7  
SB_48596| Best HMM Match : Filament (HMM E-Value=0.23)                 30   2.3  
SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)                     29   4.0  
SB_1285| Best HMM Match : SET (HMM E-Value=0.011)                      29   4.0  
SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)            29   4.0  
SB_37350| Best HMM Match : MFS_1 (HMM E-Value=4.9e-07)                 29   5.3  
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25)                    28   9.2  
SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)            28   9.2  

>SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7)
          Length = 149

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
 Frame = +3

Query: 48  RSSIPDKVPEAEDKPLNVVDNLSSEQELIDQ-ANTIKDIDNSLRANKKEVIDIPVKVIVE 224
           + SIP   P+ + K LN V+N++  +E  ++ A+ + D+ N + + K E     V   V+
Sbjct: 72  KDSIPLAKPQKQQKVLNAVENINWPEEKKERFADVLNDVHN-ISSEKSEEEGDGVVFFVK 130

Query: 225 EIKPSLKSDLKTLK 266
            +K + +++L+ LK
Sbjct: 131 SLKWA-RNELRILK 143


>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/84 (26%), Positives = 46/84 (54%)
 Frame = +3

Query: 33  RARRTRSSIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVK 212
           R R+ ++   +KV E+ D  +  ++N     EL +Q   IK+ +  L+  +KE+  +  K
Sbjct: 593 RDRQIQNLSLEKVNESRDDEITELEN-----ELEEQREIIKENEEKLKEKEKEIEKLKKK 647

Query: 213 VIVEEIKPSLKSDLKTLKCRMKMR 284
           +I  E+   LK D++T + +++ +
Sbjct: 648 II--ELSDKLK-DMETSRNKVETK 668


>SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +2

Query: 317 PGPPQHQEHETQNPEHHEDAEKIVSSVKN---DINTAEIALRQGFQEVSDGIGKWYARTE 487
           P PP H + E     H E  E+I S  K+   D+  A+  L++  +++ + +G  Y R  
Sbjct: 282 PNPPPHLDEEKIKQLHEELKEEIKSMAKDSEKDLEDAKKDLKEEIEQIKEEVG--YLRYM 339

Query: 488 QINEL 502
           +  +L
Sbjct: 340 EAKQL 344


>SB_48596| Best HMM Match : Filament (HMM E-Value=0.23)
          Length = 458

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
 Frame = +3

Query: 36  ARRTRSSIPDKVPEAEDKPLNVVDNL--SSEQELIDQANTIKDIDNSLRANKKEVIDIPV 209
           A R+R    D   +A    L + +    SS ++LID    I+D ++S    +KE + +  
Sbjct: 124 AMRSRGDTTDAEIKALKTQLKMAEETRDSSRRDLIDAHRKIRDAEDSKETLRKENLHVKR 183

Query: 210 KV-IVEEIKPSLKSDLKTLKCRMKM 281
           +V  +E  K SL+  +  L+ ++K+
Sbjct: 184 QVKDLEMEKQSLEKSVSDLREKVKL 208


>SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)
          Length = 510

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/67 (22%), Positives = 28/67 (41%)
 Frame = +2

Query: 263 EVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGF 442
           +V   ++ I+     LR+     H ++   +  HH   +KI S          + +  GF
Sbjct: 49  DVSSGSDSIENEKFTLRDDHTDNHHQNHHDHHHHHHHDKKIDSKTSIATVAWMVIVSDGF 108

Query: 443 QEVSDGI 463
             +SDG+
Sbjct: 109 HNLSDGL 115


>SB_1285| Best HMM Match : SET (HMM E-Value=0.011)
          Length = 829

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 254 KNVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAE-KIVSSVKNDI 409
           K   V +  EE+ R LV L   GPP   +  T+ P   E     ++S VK ++
Sbjct: 554 KKYSVAEFREELVRQLVGLEEFGPPPAHKPPTRAPNQFETVHMPMMSDVKRNL 606


>SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)
          Length = 416

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
 Frame = +3

Query: 144 NTIKDIDNS--LRANKKEVIDIPVKVIVEEIKPSLKSDLKTLKCRMKMRKSRGL*SI*EI 317
           N +K + +S  +++ K  + D+PV   +EE       D   ++   K    RGL ++  +
Sbjct: 315 NFMKQMKHSQEVKSRKDTLCDLPVSSSMEEKIAKSGMDFNKMRSVYKEGGERGLLTVLAL 374

Query: 318 PGPRS---IKSTKHRILNTTKMLKK 383
           P   S   +K +K R+  T +++ K
Sbjct: 375 PPQYSQLNVKGSKPRVTKTIRIINK 399


>SB_37350| Best HMM Match : MFS_1 (HMM E-Value=4.9e-07)
          Length = 349

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -2

Query: 229 ISSTITLTGMSMTSFLFARRLL-SMSLMVLAWSMSSCSLDKLSTTFKGLSSASGTLSGME 53
           IS ++   GM+  SFLFA  LL  +  +  +    S  L  LS    GL + +G+ + ++
Sbjct: 255 ISRSVVRKGMTFLSFLFAATLLVPVGFLNCSQQNISVLLLTLSCGSLGLYAPTGSANSVD 314

Query: 52  LRVRRARI*LA 20
           L  R A + +A
Sbjct: 315 LSPRFAGVTMA 325


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +2

Query: 260  VEVPDENEEIKRPLVDLRNPGPPQHQEHETQN---PEHHEDAEKI--VSSVKNDINTAEI 424
            +  PDE E +   + DL NP   +  E E Q+     + +D EKI  V S     N + I
Sbjct: 828  INSPDEREIVLSEIYDLDNPSDDEELETEIQDALETANEQDKEKILAVYSALRSPNLSGI 887

Query: 425  ALRQ 436
             L Q
Sbjct: 888  ELAQ 891


>SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 254 KNVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAE-KIVSSVKND 406
           K   V +  EE+ R LV L   GPP   +  T+ P   E     ++S VK +
Sbjct: 554 KKYSVAEFREELVRQLVGLEEFGPPPAHKPPTRAPNQFETVHMPMMSDVKRN 605


>SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25)
          Length = 626

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
 Frame = +3

Query: 3   TTRGPVANYIRARRTRSSIPDKVPEAE--DKPLNVVDNLSSEQELIDQANTIKDIDNSLR 176
           T +      +++      +P  V   +  +KP++     +S ++ +     ++D  NSL 
Sbjct: 3   TPKAETEEIVKSSENSKKVPSSVVGVDKGNKPVS-----TSPKKTVRTVKEVEDEKNSLD 57

Query: 177 ANKKEVIDIPVKVIVEEIKPSLKSDLKTL 263
              K  I   V+ IVEE+KP L + + TL
Sbjct: 58  GEPKLGITRTVE-IVEEVKPELVAKVATL 85


>SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)
          Length = 504

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +1

Query: 523 QENFGAQIQKLNETLHFIKPADTIAAPSVEETQNKASFETIESGLK--SLETNFNSGLNQ 696
           QEN   QI  LNE L  +    T A    E  QN     T  + +K  S+ ++ NS    
Sbjct: 134 QENAQKQINHLNELLTTLTDIITSAKEDWEGEQNSVGLLTCGAQVKAPSVNSSSNSPDES 193

Query: 697 LSEGIQIVAT 726
           + E I +  T
Sbjct: 194 VIEAINVFVT 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,744,656
Number of Sequences: 59808
Number of extensions: 371972
Number of successful extensions: 1389
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)