Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20723
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.75 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    25   0.75 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    25   0.75 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   4.0  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   4.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   4.0  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 139 WSMSSCSLDKLSTTFKGLSSASGTLSGMELRV 44
           W+M+  + D+ +   KGLS    +++G  +R+
Sbjct: 141 WTMTMIAFDRYNVIVKGLSGKPLSINGALIRI 172


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 139 WSMSSCSLDKLSTTFKGLSSASGTLSGMELRV 44
           W+M+  + D+ +   KGLS    +++G  +R+
Sbjct: 107 WTMTMIAFDRYNVIVKGLSGKPLSINGALIRI 138


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 139 WSMSSCSLDKLSTTFKGLSSASGTLSGMELRV 44
           W+M+  + D+ +   KGLS    +++G  +R+
Sbjct: 17  WTMTMIAFDRYNVIVKGLSGKPLSINGALIRI 48


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +1

Query: 517 HFQENFGAQIQKLNETLHFIKPADTIAAPSVEETQNKAS 633
           H  +  G     LN++LHF++ + +    SV E  ++++
Sbjct: 20  HILDTCGRDTYALNQSLHFVRASLSNLDMSVLECADRSA 58


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +3

Query: 81  EDKPLNVVDNLSSEQELIDQANTIKDIDNSL 173
           E  P+ +++NL +  E ID+    ++   S+
Sbjct: 333 ETMPMELIENLRNHPEYIDETRNYQECKCSI 363


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +1

Query: 517 HFQENFGAQIQKLNETLHFIKPADTIAAPSVEETQNKAS 633
           H  +  G     LN++LHF++ + +    SV E  ++++
Sbjct: 110 HILDTCGRDTYALNQSLHFVRASLSNLDMSVLECADRSA 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,922
Number of Sequences: 438
Number of extensions: 3638
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)