Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20723
(743 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containi... 33 0.26
At3g61390.2 68416.m06872 U-box domain-containing protein several... 31 0.61
At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containi... 31 0.61
At5g65910.1 68418.m08296 BSD domain-containing protein contains ... 31 0.81
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai... 31 0.81
At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family pr... 30 1.9
At5g60800.1 68418.m07628 heavy-metal-associated domain-containin... 29 3.3
At4g37910.1 68417.m05361 heat shock protein 70, mitochondrial, p... 29 3.3
At1g12380.1 68414.m01431 expressed protein 29 3.3
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ... 29 4.3
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr... 29 4.3
At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL) ide... 29 4.3
At1g03830.1 68414.m00364 guanylate-binding family protein contai... 29 4.3
At2g40435.1 68415.m04988 expressed protein 28 7.5
At5g54050.1 68418.m06722 DC1 domain-containing protein 27 9.9
At5g48310.1 68418.m05968 expressed protein 27 9.9
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila... 27 9.9
At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea... 27 9.9
At3g14490.1 68416.m01835 terpene synthase/cyclase family protein... 27 9.9
At1g64320.1 68414.m07289 myosin heavy chain-related similar to m... 27 9.9
At1g34480.1 68414.m04285 DC1 domain-containing protein contains ... 27 9.9
At1g11670.1 68414.m01340 MATE efflux family protein similar to r... 27 9.9
>At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 534
Score = 32.7 bits (71), Expect = 0.26
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = -2
Query: 277 FIRHFNVFKSLFNDGLISSTITLTGMSMTSFLFARRLLSMSLMVLAWSMSSCSLD--KLS 104
F+R +++ + G+I ST+T M + F RL MV + CS D S
Sbjct: 372 FLRAEDIYLEMLCKGIIPSTVTYNSM-VDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFS 430
Query: 103 TTFKGLSSASGTLSGMEL 50
T KG A G+EL
Sbjct: 431 TLIKGYCKAGRVDDGLEL 448
>At3g61390.2 68416.m06872 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 435
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +2
Query: 266 VPDENEEIKRPLVDLRN-PGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGF 442
+ +E EE+K L ++ G + +E T N H E + + + +DI GF
Sbjct: 319 IREEQEELKIKLREVSKLKGKREEEEASTSN--HREPPQYFICPITHDIMEDPHVAADGF 376
Query: 443 QEVSDGIGKWYARTEQINEL 502
+ I +W+ R + + +
Sbjct: 377 TYEGEAISRWFERGHETSPM 396
>At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 452
Score = 31.5 bits (68), Expect = 0.61
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 347 TQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYART 484
T P HH D + VS +K+++ T + ++ FQ V D G+W RT
Sbjct: 20 TSLPAHHTDLVQRVSILKDELLTIGNS-KEKFQNVLDQKGQWLFRT 64
>At5g65910.1 68418.m08296 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 432
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +2
Query: 308 LRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGI 463
L P + Q P+H E+ E +++ +KND R G ++S +
Sbjct: 64 LSQPSSSPDLQERNQTPDHPEEDEDLIAGIKNDFAEIGGRFRTGISKLSGNL 115
>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
Pfam profile: PF00628: PHD-finger
Length = 704
Score = 31.1 bits (67), Expect = 0.81
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 504 WSSLICSVRAYHFPIPSDTSW 442
WS+ S R YHF IP DT W
Sbjct: 100 WSNHFVSKRKYHFIIPIDTEW 120
>At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GI:3757520
from [Arabidopsis thaliana]
Length = 226
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/96 (22%), Positives = 48/96 (50%)
Frame = +3
Query: 60 PDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPS 239
P + P+ DK + D + + D+A +KD+++SL+ KE+ D K + + K
Sbjct: 95 PGRTPKT-DKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKD--EKNELRDEKQK 151
Query: 240 LKSDLKTLKCRMKMRKSRGL*SI*EIPGPRSIKSTK 347
LK + + + ++K K++ +P P+++ +
Sbjct: 152 LKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLSQAQ 187
>At5g60800.1 68418.m07628 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 283
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +2
Query: 260 VEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDIN 412
V++ ++ EE + VDL +P P + +E E +N ++ ED +K K D N
Sbjct: 74 VKLREKLEEKTKKKVDLVSPQPKKEKEKENKN-KNDEDKKKSEEKKKPDNN 123
>At4g37910.1 68417.m05361 heat shock protein 70, mitochondrial,
putative / HSP70, mitochondrial, putative strong
similarity to SP|Q01899 Heat shock 70 kDa protein,
mitochondrial precursor {Phaseolus vulgaris}
Length = 682
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +2
Query: 254 KNVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALR 433
K E+ + ++ K+ L+DLRN E E+ EKI + + ++I TA LR
Sbjct: 561 KEAELNAQKDQEKKQLIDLRNSADTTIYSVEKSLSEYR---EKIPAEIASEIETAVSDLR 617
Query: 434 QGF--QEVSDGIGKWYARTEQINEL 502
++V D K A + ++++
Sbjct: 618 TAMAGEDVEDIKAKVEAANKAVSKI 642
>At1g12380.1 68414.m01431 expressed protein
Length = 793
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = +2
Query: 230 QTVVEE*FKNVEVPDENEE-IKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKND 406
+ VVE FK P I PL +R+ + +PE +D +K+++ + +
Sbjct: 586 EKVVERRFKKSYHPAWAAAFILDPLYLIRDSSGKYLPPFKCLSPEQEKDVDKLITRLVSR 645
Query: 407 INTAEIALRQGFQEVSDGIGKWYARTEQINE 499
+ A IAL + + ++G+ YAR Q+ E
Sbjct: 646 -DEAHIALMELMKWRTEGLDPMYARAVQMKE 675
>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 488
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 263 EVPDENEEIKRPLVDLRNPGPPQHQEHE 346
+VPDE EEIK P + G H HE
Sbjct: 264 DVPDEEEEIKDPFKVINENGDIVHISHE 291
>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 284
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +3
Query: 84 DKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLKTL 263
DK + D + +EL + N +K +L +E+ K + E K SLKSD++ L
Sbjct: 40 DKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQ--EKNDLREEKTSLKSDIENL 97
Query: 264 KCRMKMR 284
+ + R
Sbjct: 98 NLQYQQR 104
>At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL)
identical to cDNA tubulin folding cofactor A,
GI:20514256, SP|O04350 Tubulin-specific chaperone A
(Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin
cofactor A homolog) {Arabidopsis thaliana}
Length = 113
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +2
Query: 266 VPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAE 421
+PD ++ ++ L DL++ + E + PE EDA+K V+ V+ T +
Sbjct: 62 IPDCHKRLESALADLKSTLAELEETDEKEGPE-IEDAKKTVADVEKQFPTED 112
>At1g03830.1 68414.m00364 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 991
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +3
Query: 99 VVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLKTLKCRMK 278
V + +++ +E + QA+T +D LRA V+D K+I E+ + + R +
Sbjct: 536 VTEKIAAMEEKLKQASTTED---GLRAEFSRVLDEKEKIITEKAAKLATLEQQLASTRAE 592
Query: 279 MRKS 290
++KS
Sbjct: 593 LKKS 596
>At2g40435.1 68415.m04988 expressed protein
Length = 158
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = +1
Query: 544 IQKLNETLHFIKPADTIAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSEGIQIVA 723
IQKL + + T S E T K T+E+ K N SG NQ + ++
Sbjct: 40 IQKLKQKVERFNQDPTAEQSSSEPTDPKTPMVTVETLDKGFMINVFSGKNQPGMLVSVLE 99
Query: 724 TFKADG 741
F+ G
Sbjct: 100 AFEDIG 105
>At5g54050.1 68418.m06722 DC1 domain-containing protein
Length = 580
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 263 EVPDENEEIKRPLVDLRNPGPPQHQEHE 346
+VP+E EEIK P + G H HE
Sbjct: 276 DVPEEEEEIKDPFKVINEKGDIVHFSHE 303
>At5g48310.1 68418.m05968 expressed protein
Length = 1156
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 640 TIESGLKSLETNFNSGLNQLSEGIQIVAT 726
T+ KSL+ NF SGL +S +Q+ AT
Sbjct: 636 TVFENYKSLDENFPSGLADISCPVQVSAT 664
>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
to pre-mRNA splicing factor pre-mRNA splicing factor
prp1 (SP:Q12381) [Fission yeast]
Length = 1029
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 389 SSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQA 508
+ +++D+ LR+G + + D + W A E NE A
Sbjct: 458 AKLEHDVENKSRVLRKGLEHIPDSVRLWKAVVELANEEDA 497
>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
similarity to myosin heavy chain [Rana catesbeiana]
GI:4249699; contains Pfam profile PF00787: PX domain
Length = 755
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 257 NVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQ 436
N + EN+ + + + D+R H+EHE + + + +V VK+ + T + LRQ
Sbjct: 526 NESLVQENQMLLQQINDIRENFENFHKEHEELEVKAKAELKVLVKEVKS-LRTTQSDLRQ 584
>At3g14490.1 68416.m01835 terpene synthase/cyclase family protein
contains Pfam profile: PF01397 terpene synthase family
Length = 601
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/62 (32%), Positives = 35/62 (56%)
Frame = +2
Query: 386 VSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQAACNISKKISALRYKS*MKR 565
V +KNDINT E + +G EV+ G+ Y + +++ +A ++ KI + YK M+
Sbjct: 492 VFRIKNDINTFEQEMSRG--EVAKGL-NCYMKQHGVSKEEAIGEMN-KIYSNYYKIIMEE 547
Query: 566 YI 571
Y+
Sbjct: 548 YL 549
>At1g64320.1 68414.m07289 myosin heavy chain-related similar to
myosin heavy chain (GI:4249703) [Rana catesbeiana];
similar to smooth muscle myosin heavy chain SM2
(GI:2352945) [Homo sapiens]
Length = 476
Score = 27.5 bits (58), Expect = 9.9
Identities = 30/118 (25%), Positives = 56/118 (47%)
Frame = +3
Query: 129 LIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLKTLKCRMKMRKSRGL*SI 308
L+DQ N +K SLR+ K E + ++ VEE+ + K LK+LK + ++R I
Sbjct: 94 LMDQVNGMKHELESLRSQKDE-SEAKLEKKVEEVTET-KMQLKSLKEETEEERNRLSEEI 151
Query: 309 *EIPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTVLENGTLV 482
++ G + + L++ M K+ +M +K L + S + + V E ++
Sbjct: 152 DQLKGENQMLHRRISELDSLHMEMKTKSAHEMEDASKK-LDTEVSDQKKLVKEQDDII 208
>At1g34480.1 68414.m04285 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 602
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 675 ICL*RLETRFDCFKRSFILRF 613
IC R +TRFDC K F+L F
Sbjct: 445 ICKVRSQTRFDCGKCDFVLCF 465
>At1g11670.1 68414.m01340 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family; EST gb|W43487
comes from this gene
Length = 503
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -2
Query: 205 GMSMTSFLFARRLLSMSLMVLAWSMSSCSLDKLSTTFKGLSSASGTLSG 59
GMSM + +FA RL SM L + S ++ L G+ SA TL G
Sbjct: 70 GMSMLTRIFAGRLGSMQLAAASLGNSGFNMFTLGLML-GMGSAVETLCG 117
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,935,868
Number of Sequences: 28952
Number of extensions: 269370
Number of successful extensions: 1110
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -