Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20722
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 27 2.2
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 27 3.8
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 5.0
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 26 5.0
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 26 5.0
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 26 5.0
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.7
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 25 8.8
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 27.5 bits (58), Expect = 2.2
Identities = 21/80 (26%), Positives = 35/80 (43%)
Frame = +1
Query: 514 KEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVD 693
K KP AT S D ++P+ +K P+ + A + K +A+ K + D
Sbjct: 1352 KTNKPVATTIFSSDDEDDLLPSSLK-----PSTITSTKASAKNKGKKASSVKKQSPEDDD 1406
Query: 694 EDKPADISPDAPKAEAKSAD 753
+D S PKA + +A+
Sbjct: 1407 DDFIIPGSSSTPKASSTNAE 1426
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.6 bits (56), Expect = 3.8
Identities = 18/72 (25%), Positives = 29/72 (40%)
Frame = +1
Query: 514 KEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVD 693
KE+KP+ N KK D+A I ++ +P + DA +D P+
Sbjct: 486 KEKKPTKDLQSPLPSVEEDSSNRDKKTDIADLHTDSKVGIADVLSPISPDAALQSDGPLK 545
Query: 694 EDKPADISPDAP 729
+ K + S P
Sbjct: 546 KAKEPEESSITP 557
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 334 VFWGYIVLFGLWYSGYLVVTNW 269
VFW +IVL GL+Y Y V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 571 IPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADISPDAPKAEAKSA 750
+ VK + L P V + + E+K E A +LA +K A APK+ +K
Sbjct: 9 VTQAVKALVLDP-VTGEQVSKTELKKREKQRARELAKAKKQAEKAASAPVAAPKSSSKKE 67
Query: 751 DD 756
+D
Sbjct: 68 ED 69
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 589 KIDLAPTVESDAAAIPEI-KTPEAADAPKLADNPVDEDKPAD 711
K + V SDA + + KT E AD + +DE KPAD
Sbjct: 290 KSKIRDIVNSDANVVEQSEKTTEDADEEPETEENLDEFKPAD 331
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 26.2 bits (55), Expect = 5.0
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -1
Query: 313 LFGLWYSGYLVVTNWSRFGFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIAK 134
LF + SGYL + GF +++ TS GLT ++G GT + GI+K
Sbjct: 389 LFSVDASGYL------KMGFMANLEVLTSKGLTICGMIGNGVGENKKGTNISDTQIGISK 442
Query: 133 LTAAK 119
+ K
Sbjct: 443 TNSWK 447
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 419 AEAKSADIKVEEPAAQPEDSKTEVQATVAEFQKKKNLVLL 538
AEA + D + P K V +VAE +K++L ++
Sbjct: 76 AEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVI 115
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 6.7
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Frame = +1
Query: 526 PSATDAEGSADSAAIIPNMVKKIDLAPTVESDA-AAIPEIKTPEAADAPKLADNPVDEDK 702
PS + +++ P L P+ S A P P+ A L+ P D
Sbjct: 1495 PSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQHPSAAALSSAPADNSM 1554
Query: 703 PADISPDAPK 732
P SP AP+
Sbjct: 1555 PHRSSPYAPQ 1564
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 514 KEEKPSATDAEGSADSAAIIPNMVKKI--DLAPTVESDAAAIPEIKTPEA 657
K+ +PS + +A + PN VK + D+ P + +I PEA
Sbjct: 560 KDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPEA 609
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,513
Number of Sequences: 5004
Number of extensions: 44497
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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