Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20722
(757 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.047
SB_29357| Best HMM Match : LRR_1 (HMM E-Value=0.00026) 34 0.14
SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98) 33 0.19
SB_43512| Best HMM Match : RNA_pol_delta (HMM E-Value=4.7) 31 0.76
SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 31 1.3
SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8) 31 1.3
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32) 30 1.8
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_58726| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_34673| Best HMM Match : UK (HMM E-Value=0.6) 29 3.1
SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2) 29 5.4
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 28 7.1
SB_47219| Best HMM Match : DUF414 (HMM E-Value=1.7) 28 7.1
SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013) 28 7.1
SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_20304| Best HMM Match : Vicilin_N (HMM E-Value=4.6) 28 7.1
>SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 35.5 bits (78), Expect = 0.047
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Frame = +1
Query: 514 KEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIP-------EIKTPEAADAPK 672
+E KPS D A P K+ + E+ P E++ P+ ++PK
Sbjct: 201 EEGKPSLEDGTEDTPEANKTPEEPKEDEKVTEEETPKEETPKVEDAPEEVEAPKEEESPK 260
Query: 673 LADNPVDEDKPADISPDAPKAEAK 744
D P +ED P + D PK EAK
Sbjct: 261 EEDTPKEEDAPKE---DTPKEEAK 281
>SB_29357| Best HMM Match : LRR_1 (HMM E-Value=0.00026)
Length = 521
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 655 AADAPKLADNPVDEDKPADISPDAPKAEAKSADD 756
A D+ K + P DED+P D+ P P +++K ADD
Sbjct: 425 AVDSAKKEEPPKDEDQPGDVEP--PISDSKDADD 456
>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
Length = 242
Score = 33.5 bits (73), Expect = 0.19
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +2
Query: 407 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEFQ 514
E P EA+S D KVE P + E + EV+ATV E +
Sbjct: 22 ETPIEEAESPDKKVEAPIEEAEAPEEEVEATVEEVE 57
>SB_43512| Best HMM Match : RNA_pol_delta (HMM E-Value=4.7)
Length = 241
Score = 31.5 bits (68), Expect = 0.76
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 541 AEGSADSAAIIPNMVKKIDLAPTVES-DAAAIPEIKTPEAADAPKLADNPVDEDKPADIS 717
AE S + A+ P + +P E+ D PE K A APK D P E
Sbjct: 30 AEASDATEAVAP----EAPASPESENTDDFKEPEAKEETPAAAPKAEDTPALETSGESKL 85
Query: 718 PDAPKAEAKSADD 756
PD P + +S DD
Sbjct: 86 PDTPVEDEESEDD 98
>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = +2
Query: 428 KSADIKVEEPAAQPEDSKTEVQ---ATVAEFQKKKNLVLLMQKVLPTQLPSFPTW 583
++ DI VE PA+ +KTE + A + +F++ + L+ +VL + P+ PT+
Sbjct: 781 RNEDIVVEVPASNEPAAKTEDEIRKAEMCKFEQAQEAEDLISEVLKSYAPTLPTY 835
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +1
Query: 532 ATDAEGSAD-SAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPA 708
A D SA+ +I P++ + +DL +E D +P+I T A P P D PA
Sbjct: 246 ADDLAYSAELGPSIAPSVPQGLDLPDVLEHDIPEVPDIVTGGGAPVP--PPPPADGSAPA 303
Query: 709 DISPDAP 729
P P
Sbjct: 304 PPPPPPP 310
>SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8)
Length = 1009
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 114 IAFAAVSLAMPVAEE--KDVVPAQPILEVAPKIDDSVKPTEVAAATEEKKP 260
+A A +A + EE D+ A P LE A K D++KP++++ K P
Sbjct: 732 VANEAAGVAQGIKEECEGDLAEALPALEAALKALDTLKPSDISMVKSMKNP 782
>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
Length = 1074
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = +1
Query: 523 KPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEA--ADAPKLADNPVDE 696
+P A G D+ P K D A E +A+ EA +A K NP E
Sbjct: 114 EPKKEQASGIKDAPEATPK--KGADKATPKEVEASGDEVASEAEAKPVEAAKTESNPAKE 171
Query: 697 DKPADISPDAPKAEAK 744
DKPA+ + + AK
Sbjct: 172 DKPAEKAKEDKAGPAK 187
>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1207
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 577 NMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADISPDA 726
N V DL T+ ++ + +P E D P +D P P D+SP++
Sbjct: 909 NKVTNSDL--TINTNQSTLPREPVNEGYDNPTFSDYPDGSPSPKDVSPES 956
>SB_58726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = -1
Query: 268 SRFGFFSSVAAATSVGLTESSIL----GATSRIG*AGTTSFSSATGIA 137
SR G SSV A+SVGL + L G SR G A S G+A
Sbjct: 412 SRVGLASSVGLASSVGLASRASLALRAGLASRAGLASRVGLPSCVGLA 459
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 268 SRFGFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIA 137
SR G S A+ VG +S +G SR+G A + +S+ G+A
Sbjct: 388 SRVGLVSRAGLASRVG--RASRVGLASRVGLASSVGLASSVGLA 429
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 268 SRFGFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIA 137
SR G S V + VGL +S +G SR+G A + +S G+A
Sbjct: 442 SRAGLASRVGLPSCVGL--ASRVGLASRVGLANSVGLASRVGLA 483
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 259 GFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIA 137
G S V A+ VGL S +G SR+G A + +S G+A
Sbjct: 457 GLASRVGLASRVGLANS--VGLASRVGLASSVGLASRVGLA 495
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -1
Query: 268 SRFGFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIAKL 131
SR G S A GL S +G SR+G A +S+ G+A L
Sbjct: 496 SRVGLVSRAGLALRAGLASS--VGLVSRVGLASRVGRASSVGLASL 539
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 268 SRFGFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGI 140
SR G SSV A+ VGL +S +G SR G A +S+ G+
Sbjct: 478 SRVGLASSVGLASRVGL--ASRVGLVSRAGLALRAGLASSVGL 518
>SB_34673| Best HMM Match : UK (HMM E-Value=0.6)
Length = 641
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +1
Query: 535 TDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEI--KTPEAADAPKLADNPVDEDKPA 708
TD + P+ ++ + AP P+ KT + D P A + D + A
Sbjct: 249 TDVPDRSQEVTNTPDRPQEANDAPDRPEKTIDAPDRSQKTTDTPDRPHEATDEPDRSQEA 308
Query: 709 DISPDAPKAEA 741
D +PD P+ EA
Sbjct: 309 DDTPDRPQKEA 319
>SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 571 IPNMVKKIDLAPTVESDA-AAIPEIKTPEAADAPKLADNPVDEDKPADI 714
+P VK++ P + + +K P A AP P D DKPA +
Sbjct: 338 VPEPVKEVPARPVTKQEPFKQTKPVKEPSLAPAPTANMVPSDRDKPAGL 386
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 401 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAE 508
++E+P +A ++ + E PAA+PE + E +A V +
Sbjct: 587 TAEVPIEDADTSTEEAESPAAEPEVAVKEAEAPVED 622
>SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2)
Length = 623
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 520 EKPSATDAEGSADSAAIIPNMVKKIDLAPT--VESDAAAIPEIKTPEAADAPKLADNPVD 693
E S ++E S +++A K T +SD + EI + + D+ K++ NP D
Sbjct: 130 EVASEENSEKSIETSAASETATKSPSTENTGSTKSDKDDVVEISSDD--DSDKISANPTD 187
Query: 694 EDKPADISPDAPKAE 738
+P D++ P ++
Sbjct: 188 VQEPMDLTAPKPDSD 202
>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1271
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = +1
Query: 538 DAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADIS 717
DA G + +P I A ++ D A I + + APKL DN E + ++
Sbjct: 310 DATGESGDEDFLPG---SIGGATNLQQDEAKAQTISSGSGSAAPKLTDNAAKEVQQTPVA 366
Query: 718 PDA---PKAEAKSADD 756
A KA K+A D
Sbjct: 367 QAAEVVAKAPVKAAKD 382
>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 601 APTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADISPDA 726
AP + D+ A P PE A+ DNP + +KP ++S ++
Sbjct: 1211 APASQEDSQAQPTETKPEGAE-----DNPENAEKPGEVSKES 1247
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Frame = +1
Query: 511 SKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESD--AAAIPEIKTPEAADAPKLADN 684
SKE+KP A + + A +P++ P + SD P+ + P AP L
Sbjct: 418 SKEKKPPAPLPKAHNEKIAPLPSLRASAATLPPLPSDEPPPLPPDEEKPPPPPAPALPPL 477
Query: 685 PVDEDKPADISPDAPKAEAK 744
P+ + P P K
Sbjct: 478 PLPPELPGSPGDSPPATSPK 497
>SB_47219| Best HMM Match : DUF414 (HMM E-Value=1.7)
Length = 704
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +1
Query: 595 DLAPTVESDAAAIPEIKTPEAADAPKLADNPVD---EDKPADISPDAPKAEAKS 747
D + A P++KT AD P A P D +++P D + K KS
Sbjct: 610 DRKKQTDETAVESPDVKTASEADQPVEAKKPADKSAKEEPKDAKAEDSKESLKS 663
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 640 IKTPEAADAPKLADNPVDEDKPADISPDAPKAEAKSAD 753
+++P+ A + AD PV+ KPAD S +AK+ D
Sbjct: 620 VESPDVKTASE-ADQPVEAKKPADKSAKEEPKDAKAED 656
>SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)
Length = 440
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +1
Query: 529 SATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLA--DNPVDEDK 702
S++D + S+D + KK + E D+++ E P+ DA K A D+ D+D
Sbjct: 66 SSSDDDSSSDEEVKVKKDTKKATKGSSSEDDSSSDEEEVKPKK-DAKKAATEDSSSDDDS 124
Query: 703 PADISPDAPKAEAK 744
+ + PK + +
Sbjct: 125 SGEDEDEKPKKKVE 138
>SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1643
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 425 AKSADIKVEEPAAQPEDSKTEVQATVAEFQKKKNLVLLMQK 547
A AD+ EEPA++ ++TE+ E K K+L ++ Q+
Sbjct: 340 AYMADVDDEEPASESLATRTEISELYTESAKLKSLGVIHQE 380
>SB_20304| Best HMM Match : Vicilin_N (HMM E-Value=4.6)
Length = 261
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +1
Query: 607 TVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADISPDAPKAEAK 744
T ++A PE PE K D P EDKP D D P+ E K
Sbjct: 92 TTRNNADEKPE-DNPEDTPEDKTEDRP--EDKPEDKQQDKPEPEKK 134
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,116,755
Number of Sequences: 59808
Number of extensions: 328119
Number of successful extensions: 1545
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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