Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20720
         (745 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    24   1.1  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   4.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.5  

>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 41  SGSCARRGSPPQTGRRRVGSGPELGLDLKKSTQFLRK 151
           S S  R+    + G  ++G   E+G DLK   +F+R+
Sbjct: 63  SNSPLRKARYTEKGTCKMGREIEVGYDLKSPDRFVRQ 99


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 123 KSSPNSGPEPTLLRPV*GGEPLLA 52
           K++P   PEP  +  + G  PLLA
Sbjct: 347 KNTPYHTPEPDCIHELLGHMPLLA 370


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 206 KRSPQSPKSAQCTPSH 253
           +  P+SP+S+  TP H
Sbjct: 418 QNQPESPESSSSTPRH 433


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,595
Number of Sequences: 336
Number of extensions: 3687
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)