Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20720
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    31   0.13 
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    25   8.6  

>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 24/61 (39%), Positives = 29/61 (47%)
 Frame = +2

Query: 65  SPPQTGRRRVGSGPELGLDLKKSTQFLRKCPTSPVLPSQYDEEDRFCKRSPQSPKSAQCT 244
           SP QT RR V  GP  G++ K++T   R    S    SQY   + F   S QSP S    
Sbjct: 209 SPKQT-RRVVSEGPLNGVNYKQNTTNNR---VSSFQNSQYSTLNNFQNNSNQSPNSNDLQ 264

Query: 245 P 247
           P
Sbjct: 265 P 265


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 450 VGQFPR*RHQHDLHGHRHLLDFDPATKQARKIQGRLRM 563
           VG F   R +H  H H     FDP+ ++A K++    M
Sbjct: 32  VGNF---RRKHASHSHDDASFFDPSNEEASKLRESFAM 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,114,753
Number of Sequences: 5004
Number of extensions: 66204
Number of successful extensions: 194
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)