Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20720
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1120 + 34257504-34258294,34258483-34258571,34258616-342587...    31   0.97 
12_01_1072 - 11106298-11106660,11109176-11109463,11109537-11110403     30   1.7  
03_01_0126 + 982163-982527,983006-983204,984141-984222,984284-98...    29   3.9  
02_05_1250 - 35246238-35246567,35246674-35246994                       29   3.9  
09_02_0406 - 8629287-8629304,8629384-8629865,8629977-8630291,863...    28   6.8  
04_03_1042 - 21950444-21950572,21952137-21952229,21952348-219524...    28   6.8  

>02_05_1120 +
           34257504-34258294,34258483-34258571,34258616-34258713,
           34259269-34259292,34259314-34259404,34259761-34259813,
           34259933-34260151
          Length = 454

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 22/47 (46%), Positives = 26/47 (55%)
 Frame = +2

Query: 38  YSGSCARRGSPPQTGRRRVGSGPELGLDLKKSTQFLRKCPTSPVLPS 178
           Y GS A RG+PP  G    G+ P L LDL +ST      PTSP  P+
Sbjct: 107 YRGSLAARGAPP--GSSPDGAAPSL-LDLVRST----SSPTSPQGPN 146


>12_01_1072 - 11106298-11106660,11109176-11109463,11109537-11110403
          Length = 505

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/80 (22%), Positives = 32/80 (40%)
 Frame = +2

Query: 11  QVDGMISPDYSGSCARRGSPPQTGRRRVGSGPELGLDLKKSTQFLRKCPTSPVLPSQYDE 190
           Q DG ++  Y+G    R +P + G    G+  +    + K  Q   +      + S  +E
Sbjct: 17  QADGRVNRVYTGELPSRSNPSRAGDDEAGTSKKRKRAVAKGGQVRTRRSAKAAVESDGEE 76

Query: 191 EDRFCKRSPQSPKSAQCTPS 250
           E+   +   +   S   TPS
Sbjct: 77  EEEDAEAGSEEDGSHGYTPS 96


>03_01_0126 +
           982163-982527,983006-983204,984141-984222,984284-984360,
           984548-984622,984725-984790,985220-985315,985424-985540,
           985777-985869,986052-986153,986239-986325,986401-986433
          Length = 463

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 519 PATKQARKIQGRLRMCPKYEKSEVPDIIEGVPV 617
           P +KQ + ++GR ++ P Y   E P  +E  P+
Sbjct: 132 PVSKQVKPMEGRFQLLPLYRWREAPVTVETRPL 164


>02_05_1250 - 35246238-35246567,35246674-35246994
          Length = 216

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 561 CEVFPGSSSPVSWPDQSLISVGVRE 487
           C +   S SPVSWPD   IS  +R+
Sbjct: 124 CGIQSSSHSPVSWPDSGSISALLRQ 148


>09_02_0406 -
           8629287-8629304,8629384-8629865,8629977-8630291,
           8630381-8630576
          Length = 336

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/62 (22%), Positives = 27/62 (43%)
 Frame = +2

Query: 11  QVDGMISPDYSGSCARRGSPPQTGRRRVGSGPELGLDLKKSTQFLRKCPTSPVLPSQYDE 190
           Q DG ++  Y+G    R +P + G    G+  +    + K +Q   +      + +  +E
Sbjct: 95  QADGRVNRVYTGELPSRSNPSRAGDDEAGTSKKRKRAVAKGSQVRTRRSVKTAVENDGEE 154

Query: 191 ED 196
           ED
Sbjct: 155 ED 156


>04_03_1042 -
           21950444-21950572,21952137-21952229,21952348-21952445,
           21952984-21953047,21953145-21953315,21954004-21954849
          Length = 466

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 711 SSYSRHQVFERRFCRQQWSHIWQSVLSVPLDTPE 610
           SS    Q+ +     ++W H+W+SV S+ LD+ E
Sbjct: 35  SSLPARQMVQTCVLSKRWVHLWRSVPSLNLDSRE 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,759,836
Number of Sequences: 37544
Number of extensions: 470920
Number of successful extensions: 1372
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)