Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20720
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35123| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.32 
SB_29045| Best HMM Match : Cytadhesin_P30 (HMM E-Value=7.4)            33   0.32 
SB_57731| Best HMM Match : Vicilin_N (HMM E-Value=8.2)                 32   0.56 
SB_36336| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.56 
SB_33968| Best HMM Match : Transformer (HMM E-Value=5.1)               30   1.7  
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_19841| Best HMM Match : Myb_DNA-binding (HMM E-Value=1.1)           30   2.3  
SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_55305| Best HMM Match : Pre-SET (HMM E-Value=4.6)                   29   4.0  
SB_37873| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)                     28   7.0  
SB_28494| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_27128| Best HMM Match : PADR1 (HMM E-Value=8.3)                     28   7.0  
SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   7.0  
SB_7615| Best HMM Match : RVT_1 (HMM E-Value=1e-33)                    28   7.0  
SB_53026| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_32202| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     28   7.0  
SB_1851| Best HMM Match : RVT_1 (HMM E-Value=3.2e-16)                  28   7.0  
SB_7492| Best HMM Match : Laminin_G_2 (HMM E-Value=0.0025)             28   9.2  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  

>SB_35123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +1

Query: 382 DDEVCNDATCRHCCIKKTWCQNPSVSSQDSGINMTFTDTD 501
           DD+   DA+ R    +++    PS  S+DSG+N++F +T+
Sbjct: 69  DDQDYQDASYRRNMYRRSGGSQPSEHSEDSGMNLSFEETN 108


>SB_29045| Best HMM Match : Cytadhesin_P30 (HMM E-Value=7.4)
          Length = 285

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +1

Query: 382 DDEVCNDATCRHCCIKKTWCQNPSVSSQDSGINMTFTDTD 501
           DD+   DA+ R    +++    PS  S+DSG+N++F +T+
Sbjct: 230 DDQGYQDASYRRNMYRRSGGSQPSEHSEDSGMNLSFEETN 269


>SB_57731| Best HMM Match : Vicilin_N (HMM E-Value=8.2)
          Length = 196

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
 Frame = +2

Query: 23  MISPDYSGSCARRGSPPQTGRRRVGSGPELGLDLK----KSTQFLRKCPTSPVLPSQYDE 190
           M SP++ G      +P +TGR R       G  ++    +  Q  R+   SP   +   E
Sbjct: 93  MSSPNFQGPSRAHRTPQETGRMRPYDRQRRGCIVRNHRPRDRQQSRRTARSPPHSTTDRE 152

Query: 191 EDRFCKR-SPQSPKSAQCTPSHGLQDRIAFRLIPAKHPLPT 310
           +    +R +PQ+P+S    P H  +  +  R   +K   PT
Sbjct: 153 DGTLAERHAPQAPRSG---PGHDKRRTVTVRARESKPTFPT 190


>SB_36336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
 Frame = +2

Query: 23  MISPDYSGSCARRGSPPQTGRRRVGSGPELGLDLK----KSTQFLRKCPTSPVLPSQYDE 190
           M SP++ G      +P +TGR R       G  ++    +  Q  R+   SP   +   E
Sbjct: 20  MSSPNFQGPSRAHRTPQETGRMRPYDRQRRGCIVRNHRPRDRQQSRRTARSPPHSTTDRE 79

Query: 191 EDRFCKR-SPQSPKSAQCTPSHGLQDRIAFRLIPAKHPLPT 310
           +    +R +PQ+P+S    P H  +  +  R   +K   PT
Sbjct: 80  DGTLAERHAPQAPRSG---PGHDKRRTVTVRARESKPTFPT 117


>SB_33968| Best HMM Match : Transformer (HMM E-Value=5.1)
          Length = 471

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = +2

Query: 23  MISPDYSGSCARRGSPPQTGRRRVGSGPELGLDLK----KSTQFLRKCPTSPVLPSQYDE 190
           M SP++ G      +P +TGR R       G  ++    +  Q  R+   SP  P+   E
Sbjct: 131 MSSPNFQGPSRAHRTPQETGRMRPYDRQRRGCIVRNHRPRDRQQSRRTARSPPHPTTDRE 190

Query: 191 EDRFCKR-SPQSPKS 232
           +    +R +PQ+P+S
Sbjct: 191 DGTLAERHAPQAPRS 205


>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 597 YPALHSSHTSGTCEVFPGSSSPVSWPDQSLISVGVREGHVDAAILGTDRRVLAP 436
           +P   SS T+   E  PG+++P+S    + +S+   E    AA + TD    AP
Sbjct: 755 FPVAASSRTTSPVETTPGTAAPMSSDGTTALSMSTDE--TTAAPMSTDGTTAAP 806


>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2248

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 570  KYEKSEVPDIIEGVPVCPGEHSRQTAKYETT 662
            K  ++  P   EG P  PG+ SRQ+A  ETT
Sbjct: 1501 KLTQNPAPSAPEGKPGSPGQPSRQSASSETT 1531


>SB_19841| Best HMM Match : Myb_DNA-binding (HMM E-Value=1.1)
          Length = 753

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/76 (27%), Positives = 35/76 (46%)
 Frame = +2

Query: 23  MISPDYSGSCARRGSPPQTGRRRVGSGPELGLDLKKSTQFLRKCPTSPVLPSQYDEEDRF 202
           ++S   SG+     +PP +    V S P L L   + +     CP  P  P + D++D+ 
Sbjct: 679 VVSSSPSGNATVNSAPPGSTTPIVNSSPHLTLTEAEGSF----CP-KPDNPKEPDKQDQM 733

Query: 203 CKRSPQSPKSAQCTPS 250
            K +  SP+    TP+
Sbjct: 734 AKSNLTSPQENAPTPT 749


>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2631

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 588  VPDIIEGVPVCPGEHSRQTAKYETTADGKIVFQIPDDANRKNSE 719
            +PD I  + V    H   ++   TT+DG + + +P D N++  E
Sbjct: 2535 LPDSIRAIAVSLWRHESTSSSVSTTSDG-LTYGLPIDENKEQRE 2577


>SB_55305| Best HMM Match : Pre-SET (HMM E-Value=4.6)
          Length = 490

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
 Frame = +1

Query: 388 EVCNDATCRHCCIKKTWCQNPSVSSQDSGINMTFTDTDTY*T-LIRPRNRRGRSREDFAC 564
           E C+D   + C I + W      S    G N    D  T  T L   R R  +   D+  
Sbjct: 214 EGCDDVGVKPCGIARIWVNGKDYSLHRRGFNFVVVDPKTVCTGLYTSRFRLHKEPRDYGD 273

Query: 565 ARSMRR 582
           A   RR
Sbjct: 274 AHVRRR 279


>SB_37873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 21/84 (25%), Positives = 36/84 (42%)
 Frame = +2

Query: 209 RSPQSPKSAQCTPSHGLQDRIAFRLIPAKHPLPTP*SKWSRRKTRQISQNH*ARISCLMM 388
           + P+  KSA  T SHG + R      P   P+P    +      + I ++  ++ S   +
Sbjct: 109 KEPRKSKSAPPTTSHGNRARYRMHFAPPLSPIP---ERSRGNWPKPILKSPRSQSSERRV 165

Query: 389 RFATTRPAVTAVSKKLGAKTRRSV 460
            F+   P V  +S  L  + +R V
Sbjct: 166 HFSARSPKVFWISSTLNRRRQRRV 189


>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
          Length = 2440

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 549 GRLRMCPKYEKSEVPDIIEGVPVCPGEHSRQTAKYETTA 665
           G +R+ P+  + ++PD +E  P  PG HSR +   + TA
Sbjct: 698 GDVRIPPRPAR-DIPDSLENSPPSPGIHSRISQSRKPTA 735


>SB_28494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 322 LGLWCREWMFRWN*TKCYSV 263
           +GLW   W   +N TKCY +
Sbjct: 271 VGLWAERWQMVFNPTKCYKM 290


>SB_27128| Best HMM Match : PADR1 (HMM E-Value=8.3)
          Length = 242

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 322 LGLWCREWMFRWN*TKCYSV 263
           +GLW   W   +N TKCY +
Sbjct: 117 VGLWAERWQMVFNPTKCYKM 136


>SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 393

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 322 LGLWCREWMFRWN*TKCYSV 263
           +GLW   W   +N TKCY +
Sbjct: 298 VGLWAERWQMVFNPTKCYKM 317


>SB_7615| Best HMM Match : RVT_1 (HMM E-Value=1e-33)
          Length = 363

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 322 LGLWCREWMFRWN*TKCYSV 263
           +GLW   W   +N TKCY +
Sbjct: 238 VGLWAERWQMVFNPTKCYKM 257


>SB_53026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 322 LGLWCREWMFRWN*TKCYSV 263
           +GLW   W   +N TKCY +
Sbjct: 76  VGLWAERWQMVFNPTKCYKM 95


>SB_32202| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 259

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 322 LGLWCREWMFRWN*TKCYSV 263
           +GLW   W   +N TKCY +
Sbjct: 134 VGLWAERWQMVFNPTKCYKM 153


>SB_1851| Best HMM Match : RVT_1 (HMM E-Value=3.2e-16)
          Length = 287

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 322 LGLWCREWMFRWN*TKCYSV 263
           +GLW   W   +N TKCY +
Sbjct: 162 VGLWAERWQMVFNPTKCYKM 181


>SB_7492| Best HMM Match : Laminin_G_2 (HMM E-Value=0.0025)
          Length = 87

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -3

Query: 467 SWELTDGFWHQVFLIQQ*RQVASLQTSSSDNLFELNDFGRFG 342
           S EL DG WH+V L  + R  AS+Q   +D + E+   G  G
Sbjct: 21  SMELCDGKWHRVNL-NKIRNTASIQVDGNDPV-EVKSPGSLG 60


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 119  DLKKSTQFLRKCPTSPVLPSQYDEEDRFCKR 211
            DL K+ QFL KC    +L S +++E++F KR
Sbjct: 1470 DLNKN-QFLIKCKGRMMLGSNFEKENQFFKR 1499


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,692,497
Number of Sequences: 59808
Number of extensions: 526383
Number of successful extensions: 1652
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1651
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)