Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20720
(745 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL162458-3|CAC10457.1| 1342|Homo sapiens zinc finger protein 335... 33 1.1
AF395833-1|AAN09900.1| 1342|Homo sapiens zinc-finger/leucine-zip... 33 1.1
BC033066-1|AAH33066.1| 539|Homo sapiens F-box and leucine-rich ... 31 3.3
AK223088-1|BAD96808.1| 533|Homo sapiens F-box and leucine-rich ... 31 3.3
AK026541-1|BAB15499.1| 533|Homo sapiens protein ( Homo sapiens ... 31 3.3
BX284686-21|CAM26229.1| 160|Homo sapiens G-protein signalling m... 31 4.4
BC018724-1|AAH18724.1| 160|Homo sapiens GPSM3 protein protein. 31 4.4
AL845464-21|CAI41816.1| 160|Homo sapiens G-protein signalling m... 31 4.4
AL662884-26|CAI18360.1| 160|Homo sapiens G-protein signalling m... 31 4.4
AL662830-8|CAI17541.1| 160|Homo sapiens G-protein signalling mo... 31 4.4
AJ243937-2|CAB51288.1| 160|Homo sapiens G18.1b protein protein. 31 4.4
AF155657-1|AAF67476.1| 160|Homo sapiens putative 17.9 kDa prote... 31 4.4
BC041331-1|AAH41331.2| 1121|Homo sapiens ZNF335 protein protein. 31 5.8
>AL162458-3|CAC10457.1| 1342|Homo sapiens zinc finger protein 335
protein.
Length = 1342
Score = 33.1 bits (72), Expect = 1.1
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 519 PATKQARKIQGRLRMCPKYEKSEVPDIIEGVPV 617
P+T + R+ GR R P+ E S++PD +EG P+
Sbjct: 342 PSTPRPRRRPGRPRKLPRLEISDLPDGVEGEPL 374
>AF395833-1|AAN09900.1| 1342|Homo sapiens zinc-finger/leucine-zipper
co-transducer NIF1 protein.
Length = 1342
Score = 33.1 bits (72), Expect = 1.1
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 519 PATKQARKIQGRLRMCPKYEKSEVPDIIEGVPV 617
P+T + R+ GR R P+ E S++PD +EG P+
Sbjct: 342 PSTPRPRRRPGRPRKLPRLEISDLPDGVEGEPL 374
>BC033066-1|AAH33066.1| 539|Homo sapiens F-box and leucine-rich
repeat protein 6 protein.
Length = 539
Score = 31.5 bits (68), Expect = 3.3
Identities = 23/73 (31%), Positives = 26/73 (35%)
Frame = +2
Query: 95 GSGPELGLDLKKSTQFLRKCPTSPVLPSQYDEEDRFCKRSPQSPKSAQCTPSHGLQDRIA 274
GSG L L+ + L P P R R P SA P GL+ A
Sbjct: 34 GSGYHL---LQSDSMLLVLSEPGPARPRAQRRASRRTPRQPPRGPSAAAKPKAGLRSEAA 90
Query: 275 FRLIPAKHPLPTP 313
PA P PTP
Sbjct: 91 AAPAPAPAPTPTP 103
>AK223088-1|BAD96808.1| 533|Homo sapiens F-box and leucine-rich
repeat protein 6 isoform 2 variant protein.
Length = 533
Score = 31.5 bits (68), Expect = 3.3
Identities = 23/73 (31%), Positives = 26/73 (35%)
Frame = +2
Query: 95 GSGPELGLDLKKSTQFLRKCPTSPVLPSQYDEEDRFCKRSPQSPKSAQCTPSHGLQDRIA 274
GSG L L+ + L P P R R P SA P GL+ A
Sbjct: 34 GSGYHL---LQSDSMLLVLSEPGPARPRAQRRASRRTPRQPPRGPSAAAKPKAGLRSEAA 90
Query: 275 FRLIPAKHPLPTP 313
PA P PTP
Sbjct: 91 AAPAPAPAPTPTP 103
>AK026541-1|BAB15499.1| 533|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22888 fis, clone KAT03934. ).
Length = 533
Score = 31.5 bits (68), Expect = 3.3
Identities = 23/73 (31%), Positives = 26/73 (35%)
Frame = +2
Query: 95 GSGPELGLDLKKSTQFLRKCPTSPVLPSQYDEEDRFCKRSPQSPKSAQCTPSHGLQDRIA 274
GSG L L+ + L P P R R P SA P GL+ A
Sbjct: 34 GSGYHL---LQSDSMLLVLSEPGPARPRAQRRASRRTPRQPPRGPSAAAKPKAGLRSEAA 90
Query: 275 FRLIPAKHPLPTP 313
PA P PTP
Sbjct: 91 AAPAPAPAPTPTP 103
>BX284686-21|CAM26229.1| 160|Homo sapiens G-protein signalling
modulator 3 (AGS3-like, C. elegans) protein.
Length = 160
Score = 31.1 bits (67), Expect = 4.4
Identities = 22/68 (32%), Positives = 27/68 (39%)
Frame = +2
Query: 65 SPPQTGRRRVGSGPELGLDLKKSTQFLRKCPTSPVLPSQYDEEDRFCKRSPQSPKSAQCT 244
SPP G R GP L T+ L S+ EE R +PQ+P S
Sbjct: 39 SPPPPGTRHTALGPRSASLLSLQTELLLDLVAEA--QSRRLEEQRATFYTPQNPSSLAPA 96
Query: 245 PSHGLQDR 268
P L+DR
Sbjct: 97 PLRPLEDR 104
>BC018724-1|AAH18724.1| 160|Homo sapiens GPSM3 protein protein.
Length = 160
Score = 31.1 bits (67), Expect = 4.4
Identities = 22/68 (32%), Positives = 27/68 (39%)
Frame = +2
Query: 65 SPPQTGRRRVGSGPELGLDLKKSTQFLRKCPTSPVLPSQYDEEDRFCKRSPQSPKSAQCT 244
SPP G R GP L T+ L S+ EE R +PQ+P S
Sbjct: 39 SPPPPGTRHTALGPRSASLLSLQTELLLDLVAEA--QSRRLEEQRATFYTPQNPSSLAPA 96
Query: 245 PSHGLQDR 268
P L+DR
Sbjct: 97 PLRPLEDR 104
>AL845464-21|CAI41816.1| 160|Homo sapiens G-protein signalling
modulator 3 (AGS3-like, C. elegans) protein.
Length = 160
Score = 31.1 bits (67), Expect = 4.4
Identities = 22/68 (32%), Positives = 27/68 (39%)
Frame = +2
Query: 65 SPPQTGRRRVGSGPELGLDLKKSTQFLRKCPTSPVLPSQYDEEDRFCKRSPQSPKSAQCT 244
SPP G R GP L T+ L S+ EE R +PQ+P S
Sbjct: 39 SPPPPGTRHTALGPRSASLLSLQTELLLDLVAEA--QSRRLEEQRATFYTPQNPSSLAPA 96
Query: 245 PSHGLQDR 268
P L+DR
Sbjct: 97 PLRPLEDR 104
>AL662884-26|CAI18360.1| 160|Homo sapiens G-protein signalling
modulator 3 (AGS3-like, C. elegans) protein.
Length = 160
Score = 31.1 bits (67), Expect = 4.4
Identities = 22/68 (32%), Positives = 27/68 (39%)
Frame = +2
Query: 65 SPPQTGRRRVGSGPELGLDLKKSTQFLRKCPTSPVLPSQYDEEDRFCKRSPQSPKSAQCT 244
SPP G R GP L T+ L S+ EE R +PQ+P S
Sbjct: 39 SPPPPGTRHTALGPRSASLLSLQTELLLDLVAEA--QSRRLEEQRATFYTPQNPSSLAPA 96
Query: 245 PSHGLQDR 268
P L+DR
Sbjct: 97 PLRPLEDR 104
>AL662830-8|CAI17541.1| 160|Homo sapiens G-protein signalling
modulator 3 (AGS3-like, C. elegans) protein.
Length = 160
Score = 31.1 bits (67), Expect = 4.4
Identities = 22/68 (32%), Positives = 27/68 (39%)
Frame = +2
Query: 65 SPPQTGRRRVGSGPELGLDLKKSTQFLRKCPTSPVLPSQYDEEDRFCKRSPQSPKSAQCT 244
SPP G R GP L T+ L S+ EE R +PQ+P S
Sbjct: 39 SPPPPGTRHTALGPRSASLLSLQTELLLDLVAEA--QSRRLEEQRATFYTPQNPSSLAPA 96
Query: 245 PSHGLQDR 268
P L+DR
Sbjct: 97 PLRPLEDR 104
>AJ243937-2|CAB51288.1| 160|Homo sapiens G18.1b protein protein.
Length = 160
Score = 31.1 bits (67), Expect = 4.4
Identities = 22/68 (32%), Positives = 27/68 (39%)
Frame = +2
Query: 65 SPPQTGRRRVGSGPELGLDLKKSTQFLRKCPTSPVLPSQYDEEDRFCKRSPQSPKSAQCT 244
SPP G R GP L T+ L S+ EE R +PQ+P S
Sbjct: 39 SPPPPGTRHTALGPRSASLLSLQTELLLDLVAEA--QSRRLEEQRATFYTPQNPSSLAPA 96
Query: 245 PSHGLQDR 268
P L+DR
Sbjct: 97 PLRPLEDR 104
>AF155657-1|AAF67476.1| 160|Homo sapiens putative 17.9 kDa protein
protein.
Length = 160
Score = 31.1 bits (67), Expect = 4.4
Identities = 22/68 (32%), Positives = 27/68 (39%)
Frame = +2
Query: 65 SPPQTGRRRVGSGPELGLDLKKSTQFLRKCPTSPVLPSQYDEEDRFCKRSPQSPKSAQCT 244
SPP G R GP L T+ L S+ EE R +PQ+P S
Sbjct: 39 SPPPPGTRHTALGPRSASLLSLQTELLLDLVAEA--QSRRLEEQRATFYTPQNPSSLAPA 96
Query: 245 PSHGLQDR 268
P L+DR
Sbjct: 97 PLRPLEDR 104
>BC041331-1|AAH41331.2| 1121|Homo sapiens ZNF335 protein protein.
Length = 1121
Score = 30.7 bits (66), Expect = 5.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 519 PATKQARKIQGRLRMCPKYEKSEVPDIIEG 608
P+T + R+ GR R P+ E S++PD +EG
Sbjct: 121 PSTPRPRRRPGRPRKLPRLEISDLPDGVEG 150
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,189,063
Number of Sequences: 237096
Number of extensions: 2543149
Number of successful extensions: 6059
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6052
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -