Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20720
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z50756-4|CAA90639.1|  482|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z50741-5|CAA90612.1|  482|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U40029-10|AAN65326.1|  644|Caenorhabditis elegans Hypothetical p...    28   6.1  
U40029-9|AAN65325.1|  727|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
 Frame = +2

Query: 17  DGMISPDYSGSCARRGSPPQTGRRRVGSGPELGLDLKKSTQFL-RKCPTSPVLPSQYDEE 193
           D    P   G     GSP +     V  GP+   + ++S +F     P  P  P   DE 
Sbjct: 439 DETYEPYQGGQAQPDGSPSEYSPNHVRRGPKTPPEREESVEFSPGHIPVGPKTPPMPDES 498

Query: 194 DRFCKRSP 217
               KRSP
Sbjct: 499 LEDDKRSP 506


>Z50756-4|CAA90639.1|  482|Caenorhabditis elegans Hypothetical
           protein T08D10.1 protein.
          Length = 482

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
 Frame = +2

Query: 65  SPPQTGRRRVGSGPELGLDLKKSTQFLRKCPTSPV--LPSQYDEEDRFCKRSPQSPKSAQ 238
           SPP T    V +       ++  T       T+P    PSQY        R+PQ  +S+ 
Sbjct: 67  SPPATSSPNVQTQCHQPPVVRSQTHQASVSQTTPTQTTPSQYTPASVSTARAPQFHRSSH 126

Query: 239 CTPSHGLQDRIAFRLIPAKHPLP 307
            TPS   +   AF   P     P
Sbjct: 127 VTPSQQQRIEQAFGPAPVSQSQP 149


>Z50741-5|CAA90612.1|  482|Caenorhabditis elegans Hypothetical
           protein T08D10.1 protein.
          Length = 482

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
 Frame = +2

Query: 65  SPPQTGRRRVGSGPELGLDLKKSTQFLRKCPTSPV--LPSQYDEEDRFCKRSPQSPKSAQ 238
           SPP T    V +       ++  T       T+P    PSQY        R+PQ  +S+ 
Sbjct: 67  SPPATSSPNVQTQCHQPPVVRSQTHQASVSQTTPTQTTPSQYTPASVSTARAPQFHRSSH 126

Query: 239 CTPSHGLQDRIAFRLIPAKHPLP 307
            TPS   +   AF   P     P
Sbjct: 127 VTPSQQQRIEQAFGPAPVSQSQP 149


>U40029-10|AAN65326.1|  644|Caenorhabditis elegans Hypothetical
           protein F10G7.9b protein.
          Length = 644

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 495 HRHLLDFDPATKQARKIQGRLRMCPKYEKSEVPDIIE 605
           H HL D   A +QA+ ++G  R   KY +S++   ++
Sbjct: 566 HLHLHDVTDAEQQAQLLEGLFREAFKYNESDIEPAVK 602


>U40029-9|AAN65325.1|  727|Caenorhabditis elegans Hypothetical
           protein F10G7.9a protein.
          Length = 727

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 495 HRHLLDFDPATKQARKIQGRLRMCPKYEKSEVPDIIE 605
           H HL D   A +QA+ ++G  R   KY +S++   ++
Sbjct: 649 HLHLHDVTDAEQQAQLLEGLFREAFKYNESDIEPAVK 685


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,339,357
Number of Sequences: 27780
Number of extensions: 389433
Number of successful extensions: 1204
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)