Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20720
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62270.1 68418.m07818 expressed protein                             31   0.61 
At1g29170.1 68414.m03569 expressed protein ; expression supporte...    30   1.9  
At3g20490.1 68416.m02595 expressed protein                             29   4.3  

>At5g62270.1 68418.m07818 expressed protein
          Length = 383

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -2

Query: 540 SSPVSWPDQSLISVGVREGHVDAAILGTDRRVLAPSFFDTAVTAGRVVANL 388
           S+ + W ++S+ S G+ + H D   +G  +    PS  +T   +G V++ L
Sbjct: 72  SADLDWDNKSMWSTGLTKEHFDGVSVGRQKNAANPSSDNTPSDSGDVMSKL 122


>At1g29170.1 68414.m03569 expressed protein ; expression supported
           by MPSS
          Length = 1016

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 131 STQFLRKCPTSPVLPSQYDEEDRFCKRSPQSPKSAQCTPSHGLQD 265
           S Q L +  TS  LP  Y ++D FC+ SP    +   + +H L +
Sbjct: 770 SFQLLPETGTS--LPDSYSDDDTFCRSSPYMSDTDYLSDNHSLSN 812


>At3g20490.1 68416.m02595 expressed protein
          Length = 458

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +2

Query: 65  SPPQTGRRRVGSG---PELGLDLKKSTQFLRKCPTSPVL 172
           +P  TG + +G G   PELGL +  S + L    TSPVL
Sbjct: 28  NPSSTGDQLIGDGDNEPELGLTVSDSDRELEPDFTSPVL 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,578,280
Number of Sequences: 28952
Number of extensions: 366423
Number of successful extensions: 1035
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)