Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20719
(388 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 134 6e-33
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc... 129 2e-31
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S... 29 0.34
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 1.8
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 25 3.1
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 25 4.1
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 25 5.5
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 24 7.2
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 24 9.6
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 24 9.6
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 24 9.6
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 24 9.6
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 24 9.6
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 9.6
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 24 9.6
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 134 bits (323), Expect = 6e-33
Identities = 57/83 (68%), Positives = 71/83 (85%)
Frame = +2
Query: 14 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 193
MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY
Sbjct: 1 MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60
Query: 194 MFQLPKLYAKLHYCVSCAIHTKL 262
+ +PKLY KL YCVSCAIH+++
Sbjct: 61 EYTIPKLYIKLQYCVSCAIHSRV 83
Score = 29.5 bits (63), Expect = 0.19
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Frame = +1
Query: 256 KVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 354
+VVR RS++ RRIRT PP+ + RD + P AV +
Sbjct: 82 RVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117
>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 129 bits (311), Expect = 2e-31
Identities = 55/83 (66%), Positives = 69/83 (83%)
Frame = +2
Query: 14 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 193
MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY
Sbjct: 1 MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60
Query: 194 MFQLPKLYAKLHYCVSCAIHTKL 262
+ +PK+Y KL YCVSCAIH ++
Sbjct: 61 EYAIPKIYVKLQYCVSCAIHARV 83
Score = 30.3 bits (65), Expect = 0.11
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Frame = +1
Query: 256 KVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 354
+VVR RS++ RRIRT PP+ + RD R P A+ +
Sbjct: 82 RVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117
>SPCC126.15c |sec65||signal recognition particle subunit Sec65
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 28.7 bits (61), Expect = 0.34
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 95 RCVPKDKAIKKFVIRNIVEAAAVRDI 172
RCVPKDKAI + +NI A VRD+
Sbjct: 20 RCVPKDKAILNPLAKNI--ADVVRDL 43
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.2 bits (55), Expect = 1.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 209 KLYAKLHYCVSCAIHTKLSGTDRRKTEESVL 301
+L+ +L CV +H K+S TD + E +L
Sbjct: 3062 ELFYRLSNCVEKVLHNKISITDLKTEYEEIL 3092
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 3.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 260 LSGTDRRKTEESVLLPRVTSLGT 328
++ DR +TE SVL RVT +G+
Sbjct: 1 MAAVDRSRTEISVLSDRVTDVGS 23
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.0 bits (52), Expect = 4.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 241 MRHPHKVVRNRSKKDRRIRTPPKSNFPRDMSR 336
MR+ + + IRTP KS FP+D ++
Sbjct: 140 MRYKKNLTKISKNHHSIIRTPKKSYFPKDHAK 171
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = -1
Query: 154 RFYDVPNHELFDSLVFWHAPRAVCASHGFNVTTSMLGASS 35
+ +DV + +L + + P+A+C + ++ TS++ SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 24.2 bits (50), Expect = 7.2
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Frame = +2
Query: 101 VPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLY--AKLHYCVSCAIHTKLSGTD 274
+PKDKA++ RN + A I DA + + + + +K S KL+
Sbjct: 167 IPKDKAVENNHQRNAEKPVASDKITDAKLLARLERVRAWKESKAKQEASKKEEHKLNTKP 226
Query: 275 RRKTEESVLLPRVTSLGTCHVHRQCKGSDLLLN 373
+ ++ +P T + ++RQ SD+ N
Sbjct: 227 QVTAKDQNAMPS-TGISGFEINRQKDTSDMKRN 258
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 23.8 bits (49), Expect = 9.6
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Frame = -2
Query: 294 DSSVFLRSVPDNFVWMAHDTQ*W----SLAYNLGSWNI 193
DS++FL ++P + W+ W + NL SW +
Sbjct: 192 DSAIFLEALPSSHQWLLTVMSFWWAIGQVIANLVSWGL 229
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 23.8 bits (49), Expect = 9.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 321 REVTLGRSTDSSVFLRSVPDNFVWMAH 241
R TL T VFLR V + +W H
Sbjct: 369 RNNTLPLLTTKRVFLRGVLEELLWFIH 395
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 23.8 bits (49), Expect = 9.6
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = -3
Query: 386 YFIIYLIINHFLCTACGRDMS 324
Y ++ +++H+L CG+D+S
Sbjct: 165 YGHLHCVLDHYLIIFCGQDLS 185
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 23.8 bits (49), Expect = 9.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 306 GRSTDSSVFLRSVPDNFVW 250
G S+ L +VPDN+VW
Sbjct: 272 GELPSESLVLGTVPDNWVW 290
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 23.8 bits (49), Expect = 9.6
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 89 CARCVPKDKAIKKFVIRNIVEAAAVRDINDAS 184
C R P KA+ +RN +E A I D +
Sbjct: 1214 CCRSSPMQKALMVQKVRNTLEKAVTLAIGDGA 1245
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 23.8 bits (49), Expect = 9.6
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = -1
Query: 70 FNVTTSMLGASSITAL---TSHVSN 5
FN+ TS +SS+T+ +SH+SN
Sbjct: 100 FNILTSNFASSSVTSAPTQSSHISN 124
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 8 RNMTRKRRNGGRAKHG 55
R R RR GRAKHG
Sbjct: 378 REARRMRRRQGRAKHG 393
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,481,924
Number of Sequences: 5004
Number of extensions: 26504
Number of successful extensions: 73
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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