Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20719
(388 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474... 135 1e-32
04_04_0979 - 29862280-29862444,29862718-29862999,29863831-298639... 29 1.7
08_02_1601 - 28138206-28138597,28138928-28139054,28139150-281399... 27 5.2
11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458 27 6.9
09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832 27 6.9
09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280 27 6.9
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 27 6.9
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486... 27 6.9
01_05_0103 - 18137176-18137283,18137375-18137440,18137592-181378... 26 9.1
>01_06_1177 +
35147036-35147038,35147128-35147220,35147322-35147406,
35147588-35147760
Length = 117
Score = 135 bits (326), Expect = 1e-32
Identities = 57/83 (68%), Positives = 70/83 (84%)
Frame = +2
Query: 14 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 193
MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+
Sbjct: 1 MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60
Query: 194 MFQLPKLYAKLHYCVSCAIHTKL 262
+ LPKLYAK+H+CVSCAIH +
Sbjct: 61 GYVLPKLYAKVHHCVSCAIHAHI 83
>04_04_0979 -
29862280-29862444,29862718-29862999,29863831-29863929,
29864037-29864366
Length = 291
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 196 VPAP*VIR*APLLRVMRHPHKVV 264
+PAP + R APLLR R PH ++
Sbjct: 22 LPAPRIPRLAPLLRTPRRPHPLI 44
>08_02_1601 -
28138206-28138597,28138928-28139054,28139150-28139914,
28140714-28140929,28141433-28141903
Length = 656
Score = 27.1 bits (57), Expect = 5.2
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 181 GIVNISDRRRFYDVPNHELFDSLVFWHAPRAVCASHGFN--VTTSMLGASSIT 29
GI + D +YD + LF+ L+ P A +SH F+ V T + S+ T
Sbjct: 439 GIDMVDDGMPYYDAMDDNLFNDLLSSVQPSAGSSSHAFSGPVLTQEVNNSTYT 491
>11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458
Length = 619
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 188 YPMFQLPKLYAKLHYCVSCAIHTKLSGTDRR 280
YP +L K L Y A+H+ +SGT+ R
Sbjct: 344 YPKSELDKARGSLTYSFRYAMHSVISGTELR 374
>09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832
Length = 433
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +2
Query: 17 TRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVR 166
T RR A G G AV C +CA P + A+ + + A R
Sbjct: 78 TSSRRTDPPAGAGAGEDDAVACPSCAEPFPSELAVSDHLDGCLAAAGGAR 127
>09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280
Length = 422
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 223 APLLRVMRHPHKVVRNRSKKDRRIRTPPK 309
+PL R++R + +KK+RR+R P K
Sbjct: 317 SPLFRILRTLFGLCSAEAKKNRRLRNPAK 345
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 73 REMHKLRAVRAKRQGYQKVRD*EHRRSGGGQR 168
R+ K ++ R K +G +K R EH R GG+R
Sbjct: 101 RKREKTQSDRDKDKGKEKERMEEHERRPGGER 132
>05_01_0554 +
4856131-4856605,4858051-4858098,4860611-4860792,
4861409-4863136
Length = 810
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 163 DRRRFYDVPNHELFD 119
DR FYD PN+E FD
Sbjct: 354 DRTLFYDEPNYEAFD 368
>01_05_0103 -
18137176-18137283,18137375-18137440,18137592-18137828,
18137914-18138159,18138483-18138686,18138781-18138852
Length = 310
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 125 KFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHTKLSGTDRRKTE 289
K V+ ++ + V ++N A V +F + Y + CA+ K SGT + E
Sbjct: 164 KEVLLDLFKGEVVENLNLAGVDRVFVCTAISPTTVYMMHCALRLKRSGTSIPRIE 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,342,551
Number of Sequences: 37544
Number of extensions: 198699
Number of successful extensions: 552
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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