Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20719
         (388 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)             158   1e-39
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)                   27   7.1  
SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   7.1  
SB_47439| Best HMM Match : E6 (HMM E-Value=3.2)                        26   9.3  
SB_10674| Best HMM Match : E6 (HMM E-Value=3.2)                        26   9.3  
SB_41260| Best HMM Match : DUF1081 (HMM E-Value=1.4)                   26   9.3  

>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
          Length = 289

 Score =  158 bits (384), Expect = 1e-39
 Identities = 73/98 (74%), Positives = 83/98 (84%)
 Frame = +2

Query: 14  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 193
           MT+KR NGGR+KHGRGHVK VRCTNCARCVPKDK+IKKFVIRNIVEAAAVRDI DASVY 
Sbjct: 1   MTKKRCNGGRSKHGRGHVKFVRCTNCARCVPKDKSIKKFVIRNIVEAAAVRDIADASVYE 60

Query: 194 MFQLPKLYAKLHYCVSCAIHTKLSGTDRRKTEESVLLP 307
           ++ LPKLY KLHYCVSCAIH+K+   +R K +  +  P
Sbjct: 61  VYALPKLYVKLHYCVSCAIHSKVV-RNRSKEDRKIRTP 97



 Score = 36.3 bits (80), Expect = 0.009
 Identities = 15/17 (88%), Positives = 17/17 (100%)
 Frame = +1

Query: 256 KVVRNRSKKDRRIRTPP 306
           KVVRNRSK+DR+IRTPP
Sbjct: 82  KVVRNRSKEDRKIRTPP 98


>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
          Length = 2157

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +2

Query: 14   MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 193
            M  ++ N    K+ R     +  TNC      +K   K   +NI+   +  D  D+S+YP
Sbjct: 1819 MLYRQNNWYYIKNSRNTEGFIPFTNCIAEDEYEKRQNKLSRQNIIRNTSFLDSMDSSIYP 1878


>SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 842

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 101 VPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKL 214
           + K K  +  VI   + A AV D++  +VYP+F  P L
Sbjct: 47  IVKKKRNEGKVIYLFIGALAVTDVSLLAVYPLFAFPVL 84


>SB_47439| Best HMM Match : E6 (HMM E-Value=3.2)
          Length = 436

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +2

Query: 137 RNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHTKLSGTDRRKTEE--SVLLPR 310
           R   EA  +R+ +     P  +   +  +  YCVSC +  + S T++   +E   V +PR
Sbjct: 238 RKFKEAKGIREWHCVKTLPQQEKVLVRHQTCYCVSCIVKDEDSCTNKAWLDEWKEVTIPR 297

Query: 311 VTSLGTCHVHRQ 346
               GT  + RQ
Sbjct: 298 D---GTVAITRQ 306


>SB_10674| Best HMM Match : E6 (HMM E-Value=3.2)
          Length = 436

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +2

Query: 137 RNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHTKLSGTDRRKTEE--SVLLPR 310
           R   EA  +R+ +     P  +   +  +  YCVSC +  + S T++   +E   V +PR
Sbjct: 238 RKFKEAKGIREWHCVKTLPQQEKVLVRHQTCYCVSCIVKDEDSCTNKAWLDEWKEVTIPR 297

Query: 311 VTSLGTCHVHRQ 346
               GT  + RQ
Sbjct: 298 D---GTVAITRQ 306


>SB_41260| Best HMM Match : DUF1081 (HMM E-Value=1.4)
          Length = 617

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 21/89 (23%), Positives = 37/89 (41%)
 Frame = +2

Query: 65  VKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSC 244
           +K  R  NC+  + K++A+ + V   +        +  ++   +F   K        V  
Sbjct: 403 LKIERTFNCS--LDKERAVYRLVSSGM---GVWLSLQSSATVRLFHATKYECLADVDVGP 457

Query: 245 AIHTKLSGTDRRKTEESVLLPRVTSLGTC 331
            +H  L+G+D    +      RVTSL TC
Sbjct: 458 PVHKMLAGSDAIIRQHKAACLRVTSLLTC 486


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,551,641
Number of Sequences: 59808
Number of extensions: 215749
Number of successful extensions: 540
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)