Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20719
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   138   1e-33
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    29   1.1  
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    29   1.1  
AL032635-6|CAE18002.1|  193|Caenorhabditis elegans Hypothetical ...    27   4.6  
AL032635-5|CAB63375.1|  260|Caenorhabditis elegans Hypothetical ...    27   4.6  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  138 bits (334), Expect = 1e-33
 Identities = 61/83 (73%), Positives = 68/83 (81%)
 Frame = +2

Query: 14  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 193
           MT KRRN GR K  RGHV  +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 194 MFQLPKLYAKLHYCVSCAIHTKL 262
            + LPKLY KLHYC++CAIH+K+
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKV 83



 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 256 KVVRNRSKKDRRIRTPP 306
           KVVRNRS++ RR R PP
Sbjct: 82  KVVRNRSREARRDRNPP 98


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 62  HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLH--Y 232
           H+K ++C NC+     +K+++  +IR+  E A   ++  A      +L P    K H  Y
Sbjct: 80  HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 139

Query: 233 C 235
           C
Sbjct: 140 C 140


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 62  HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLH--Y 232
           H+K ++C NC+     +K+++  +IR+  E A   ++  A      +L P    K H  Y
Sbjct: 198 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 257

Query: 233 C 235
           C
Sbjct: 258 C 258


>AL032635-6|CAE18002.1|  193|Caenorhabditis elegans Hypothetical
           protein Y51A2A.11 protein.
          Length = 193

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 5   VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 106
           +R +  K+ +G  A    G ++  RC N A C P
Sbjct: 83  IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 116


>AL032635-5|CAB63375.1|  260|Caenorhabditis elegans Hypothetical
           protein Y51A2A.7 protein.
          Length = 260

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 5   VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 106
           +R +  K+ +G  A    G ++  RC N A C P
Sbjct: 150 IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,364,187
Number of Sequences: 27780
Number of extensions: 157874
Number of successful extensions: 456
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)