Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20719
         (388 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   2.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   2.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   2.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   2.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   8.6  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 14  MTRKRRNGGRAKHGRGHVKAVRCTNC 91
           +T+KR  G       G  + V CTNC
Sbjct: 405 VTQKREGGPPTGATTGPNEIVTCTNC 430


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 14  MTRKRRNGGRAKHGRGHVKAVRCTNC 91
           +T+KR  G       G  + V CTNC
Sbjct: 425 VTQKREGGPPTGATTGPNEIVTCTNC 450


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 14  MTRKRRNGGRAKHGRGHVKAVRCTNC 91
           +T+KR  G       G  + V CTNC
Sbjct: 374 VTQKREGGPPTGATTGPNEIVTCTNC 399


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = -2

Query: 273 SVPDNFVWMAHD 238
           S+P++++W+ HD
Sbjct: 106 SIPNHYLWLYHD 117



 Score = 21.0 bits (42), Expect = 4.9
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -2

Query: 372 FNNKSLPLHCLWT*HVPREVTLGRSTDSSVFLRSVPDNFVWMAHDTQ 232
           F+  S+P H LW  H    + + + T     + S    F    HDTQ
Sbjct: 102 FHEMSIPNHYLWLYHDKTLLYMSKLT----LVLSCAMKFESYPHDTQ 144


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +2

Query: 230 YCVSCAIH 253
           YCV+C +H
Sbjct: 542 YCVACGLH 549


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,601
Number of Sequences: 438
Number of extensions: 1924
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)