Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20719
         (388 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve...   137   3e-33
At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B)           135   1e-32
At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)           135   1e-32
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r...    27   4.4  

>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
           40S ribosomal protein S26
          Length = 130

 Score =  137 bits (331), Expect = 3e-33
 Identities = 61/98 (62%), Positives = 74/98 (75%)
 Frame = +2

Query: 14  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 193
           MT KRRNGGR KH RGHVK +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY 
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 194 MFQLPKLYAKLHYCVSCAIHTKLSGTDRRKTEESVLLP 307
            + LPKLYAK  YCVSCAIH+ +    R +T   V  P
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRV-RSRTNRRVRTP 97



 Score = 30.7 bits (66), Expect = 0.36
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 247 HPHKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 351
           H H VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 80  HSH-VVRVRSRTNRRVRTPPPRFARRKEDTPKPAQ 113


>At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B) 
          Length = 131

 Score =  135 bits (326), Expect = 1e-32
 Identities = 60/98 (61%), Positives = 73/98 (74%)
 Frame = +2

Query: 14  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 193
           MT KRRNGGR KH RGHV  +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY 
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 194 MFQLPKLYAKLHYCVSCAIHTKLSGTDRRKTEESVLLP 307
            + LPKLYAK  YCVSCAIH+ +    R +T   V  P
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRV-RSRTNRRVRTP 97



 Score = 29.5 bits (63), Expect = 0.82
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 247 HPHKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 351
           H H VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 80  HSH-VVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQ 113


>At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)
          Length = 133

 Score =  135 bits (326), Expect = 1e-32
 Identities = 60/98 (61%), Positives = 73/98 (74%)
 Frame = +2

Query: 14  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 193
           MT KRRNGGR KH RGHV  +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY 
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 194 MFQLPKLYAKLHYCVSCAIHTKLSGTDRRKTEESVLLP 307
            + LPKLYAK  YCVSCAIH+ +    R +T   V  P
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRV-RSRTNRRVRTP 97



 Score = 29.5 bits (63), Expect = 0.82
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 247 HPHKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 351
           H H VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 80  HSH-VVRVRSRTNRRVRTPPPRFARRKEDTPKPGQ 113


>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1136

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 71  AVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKL 214
           ++ C  C   VP+    +K  +       AVRD+ + ++ P F +P L
Sbjct: 572 SILCDRCEEIVPEISLARKIFV------CAVRDVFEGALLPTFDVPDL 613


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,935,083
Number of Sequences: 28952
Number of extensions: 147106
Number of successful extensions: 389
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)