Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20718
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19170.1 68416.m02434 peptidase M16 family protein / insulina...    31   0.86 
At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,...    27   8.0  
At2g16970.1 68415.m01955 expressed protein  ; expression support...    27   8.0  
At1g32420.1 68414.m04002 F-box family protein contains F-box dom...    27   8.0  

>At3g19170.1 68416.m02434 peptidase M16 family protein / insulinase
           family protein contains Pfam domain, PF05193: Peptidase
           M16 inactive domain
          Length = 1080

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 20/49 (40%), Positives = 28/49 (57%)
 Frame = +1

Query: 484 FIRNCRQVPKSFASQTASTPRTAVGR*PCHIILRVSSGILSRARSLIRR 630
           F R  RQ P+S+ S T+ST   A  R P   + R+SS  ++  R L+RR
Sbjct: 17  FFRFFRQFPRSYMSLTSST---AALRVPSRNLRRISSPSVAGRRLLLRR 62


>At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,
           putative similar to SP|Q03460 Glutamate synthase [NADH],
           chloroplast precursor (EC 1.4.1.14) (NADH- GOGAT)
           {Medicago sativa}
          Length = 2208

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 233 RARKCVEPCSWKKPVIQEN*LRCTRRR 153
           R R C   CS KKPVI E+    TR R
Sbjct: 42  RRRSCTARCSVKKPVIPESPFLGTRVR 68


>At2g16970.1 68415.m01955 expressed protein  ; expression supported
           by MPSS
          Length = 414

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 44  FFTGSTEIFAPVSTKNLSPVILSVIHRRCIGVTVHIPACEYTSVSFPELLAFSRNT 211
           + TG  ++   + T  + PVI ++  R  I   + +P C   S+  P +LA+ R+T
Sbjct: 51  YLTGVEQVTVGLGTMVMMPVIGNLSDRYGIKTLLTLPMC--LSILPPAILAYRRDT 104


>At1g32420.1 68414.m04002 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 302

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 153 PPASTPQLVFLNYWLFPGTRFYTFSSS 233
           PP    +L+F +  L+PG  F+ FSS+
Sbjct: 86  PPPRDIKLIFHHQVLYPGPHFFIFSST 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,988,938
Number of Sequences: 28952
Number of extensions: 209999
Number of successful extensions: 491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)