Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20716
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    31   0.22 
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    31   0.22 
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    28   1.6  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   4.7  
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    25   8.3  

>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -2

Query: 508 MDVYVHQFFYQIHYEEAAARQ*GSQ*EIKFLKNVPRLQIFNVLLDFRHH 362
           +D+Y+ +FF  + Y+ AA    GSQ  +K +KN     I +    ++H+
Sbjct: 513 LDMYIQKFFDYVGYQTAALAACGSQSFLKRIKNSVNKSISSTTDIYQHY 561


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = +2

Query: 323 FGGGVLLSTTFMHVMPEVQENIENLQARNILQEFDFSLTPLLTCCGFFIMYLIEELVHIY 502
           FG GV+L+T F+H++      + +    ++   +D++    L  C F +  L+E L++ Y
Sbjct: 106 FGSGVILATAFIHLLAPACNKLYDPCLDDLFGGYDWAPGICLISCWFIL--LLEVLLNRY 163

Query: 503 I 505
           +
Sbjct: 164 V 164


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +2

Query: 392 NLQARNILQEFDFSLTPLLTCCG---FFIMYLIEELVHIYIHTERRIMDRQIYWSEI 553
           N+Q    LQ  +FS  P++  CG   + + Y++E+    +    + I+ +++  +E+
Sbjct: 417 NIQKVQWLQPSEFSSRPVIVICGEDAYTVAYIVEDEDESFTEVTQTIISQEVLDNEL 473


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 93  HRANRQTNKMAYRHSHDHDDDTDGIV 170
           +R    T  +A    +D+DDDTDGI+
Sbjct: 291 NRLAEMTAHLAESSDYDNDDDTDGII 316


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = -1

Query: 617 DSVEF---LASL-LCPSVQRLLRTLKFLTS-RSVCPLFFSLYGCICAPI 486
           DS EF   LA + + P     L  LKF    R+VCPL  ++  CI  PI
Sbjct: 455 DSEEFETLLAKMNMTPDFNDNLLQLKFTDDVRNVCPLNLNVCCCIAEPI 503


>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 175 PKAFPWWCFSVLP*YVV*YLRSSRESL 255
           PK FPW+   VLP Y + YL ++ +++
Sbjct: 277 PKDFPWFVSDVLP-YDIEYLLTNLDTI 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,409
Number of Sequences: 5004
Number of extensions: 62163
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)