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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20716
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601           32   0.53 
03_05_0608 - 26086437-26086892,26091253-26091921                       30   1.6  
06_03_0722 - 23869981-23870250                                         30   2.1  
05_01_0470 - 3747783-3748097,3749433-3750305                           30   2.1  
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183...    29   3.7  
04_04_1377 - 33064906-33065607                                         29   3.7  
05_05_0186 + 23071429-23072034,23072182-23072331,23073247-23073552     29   4.9  
07_03_1196 + 24714626-24714649,24715034-24715297                       28   6.5  
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377...    28   6.5  
12_02_0365 + 18045340-18045783                                         28   8.6  
03_04_0049 - 16814121-16814515,16815659-16815788,16815905-168159...    28   8.6  
02_05_0039 + 25335690-25335883,25335984-25336131,25337292-253373...    28   8.6  
02_02_0543 + 11360514-11361350,11361434-11361559,11361648-113619...    28   8.6  

>07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601
          Length = 390

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +2

Query: 302 VVMTLLSFGGGVLLSTTFMHVMPEVQENIEN--LQARNILQEFDFS 433
           V   + +F  GV+L+T F+H++P+  +N+ +  L A    +EF F+
Sbjct: 83  VFFLVKAFAAGVILATGFIHILPDAFDNLTDDCLPAGGPWKEFPFA 128


>03_05_0608 - 26086437-26086892,26091253-26091921
          Length = 374

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 320 SFGGGVLLSTTFMHVMPEVQENIEN-LQARNILQEFDFS 433
           +F  GV+L+T +MHV+P+   N+ +    R    EF F+
Sbjct: 101 AFASGVILATGYMHVLPDAFNNLTSPCLPRKPWSEFPFA 139


>06_03_0722 - 23869981-23870250
          Length = 89

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +1

Query: 259 ALRRRRGDVQVYEPGGDDSALLRRRCAALNDFHARDA*SPR 381
           A+RR R D+ +  PG  + A + RRCAA+ + H R    PR
Sbjct: 7   AMRRLR-DL-LAPPGESELARMYRRCAAIEELHRRKRRGPR 45


>05_01_0470 - 3747783-3748097,3749433-3750305
          Length = 395

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = +2

Query: 299 RVVMTLLSFGGGVLLSTTFMHVMPEVQENIENLQARNILQEFDFSLTPLLTCCGFFIMYL 478
           R ++ +  +  GV+LST+ +HV+P+    + +          DF    L +  G  +  L
Sbjct: 62  RGLLLVKCYAAGVILSTSLVHVLPDAHAALADCAVATRRPWRDFPFAGLFSLVGALLALL 121

Query: 479 IE 484
           ++
Sbjct: 122 VD 123


>08_02_0113 - 12715888-12716181,12717443-12717602,12718327-12718368,
            12718443-12718465,12718616-12720653,12720736-12720965,
            12722207-12722329,12722438-12723010,12724684-12724733,
            12726828-12726923,12726987-12727394,12727609-12727795
          Length = 1407

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 219  ISWKHRKAPPWKCLWPI 169
            +SWKH K  PW  +W +
Sbjct: 1245 LSWKHNKCYPWNWVWQV 1261


>04_04_1377 - 33064906-33065607
          Length = 233

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 370 RHHVHESR*EQHTASEGEQSHHHPVRRLER 281
           +HH H      H    GE+ HHH  ++ +R
Sbjct: 180 KHHHHHHHHHPHLQPHGEEQHHHHEQKHQR 209


>05_05_0186 + 23071429-23072034,23072182-23072331,23073247-23073552
          Length = 353

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +2

Query: 302 VVMTLLSFGGGVLLSTTFMHVMPEVQENIEN 394
           V +++ +F GGV+L+T  +H++P   E + +
Sbjct: 81  VFLSVKAFAGGVILATGLVHILPAAFEALSS 111


>07_03_1196 + 24714626-24714649,24715034-24715297
          Length = 95

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = -2

Query: 331 ASEGEQSHHHPVRRL---ERPRVF 269
           A EGE+ HHH  RR    +RP VF
Sbjct: 52  ADEGEKYHHHAFRRFLGTQRPEVF 75


>02_05_1331 + 35736543-35736638,35737407-35737525,35737670-35737715,
            35738117-35738172,35738452-35738547,35738844-35738961,
            35739406-35739672,35740023-35740124,35740302-35740659,
            35740750-35740863,35741045-35741676,35741895-35742103,
            35742597-35742819,35743419-35743538,35743888-35743914,
            35744281-35745045,35745431-35748511
          Length = 2142

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 632  GDSIPDSVEFLASLLCPSVQRLLRTLKFLTSRSV 531
            GD  PD +E L S +  + + ++  L FL +R +
Sbjct: 1282 GDQFPDEIEKLWSTVASNTRNIIPVLNFLITRGI 1315


>12_02_0365 + 18045340-18045783
          Length = 147

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 329 GGVLLSTTFMHVMPEVQENIENLQ 400
           GGVL+  T   V+P VQ N E L+
Sbjct: 67  GGVLVERTIKEVLPAVQRNKEGLE 90


>03_04_0049 -
           16814121-16814515,16815659-16815788,16815905-16815963,
           16816610-16817102
          Length = 358

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +2

Query: 323 FGGGVLLSTTFMHVMPEVQENIENLQARNILQEFDFSLTPLLTCCGFFIMYLIE 484
           F GGV L T  MH + +  E   +L     L    +    +L C G+ +  L +
Sbjct: 94  FAGGVFLGTAMMHFLADANETFADL-----LPGTAYPFAFMLACAGYVLTMLAD 142


>02_05_0039 +
           25335690-25335883,25335984-25336131,25337292-25337349,
           25337652-25338116,25338435-25338575,25338694-25339934
          Length = 748

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 520 NNGQTDLLVRNLSVRKSRCTEGHSNEAKNSTESGIE 627
           + G  D LVRN+SV     +   +NE  NST +G E
Sbjct: 180 DRGDVDYLVRNISVDNGYMSV--TNEQNNSTSNGTE 213


>02_02_0543 +
           11360514-11361350,11361434-11361559,11361648-11361976,
           11362078-11362861
          Length = 691

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 259 ALRRRRGDVQVYEPGGDDS-ALLRRRCAALNDFHARDA*SPREH*KFASEEHSSRI*FLT 435
           A  RR   V V EP  DD+ A+LRR   +  D HA  + +P      +S   +S+   L 
Sbjct: 225 AFERRFQKVHVAEPSVDDTVAILRRLKPSYQDHHAWISRTPPSSPPPSSPVATSQAIDLV 284

Query: 436 DSPIDVLRLL 465
           D      RLL
Sbjct: 285 DEACATARLL 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,258,585
Number of Sequences: 37544
Number of extensions: 440045
Number of successful extensions: 1307
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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