Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20716
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601 32 0.53
03_05_0608 - 26086437-26086892,26091253-26091921 30 1.6
06_03_0722 - 23869981-23870250 30 2.1
05_01_0470 - 3747783-3748097,3749433-3750305 30 2.1
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183... 29 3.7
04_04_1377 - 33064906-33065607 29 3.7
05_05_0186 + 23071429-23072034,23072182-23072331,23073247-23073552 29 4.9
07_03_1196 + 24714626-24714649,24715034-24715297 28 6.5
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377... 28 6.5
12_02_0365 + 18045340-18045783 28 8.6
03_04_0049 - 16814121-16814515,16815659-16815788,16815905-168159... 28 8.6
02_05_0039 + 25335690-25335883,25335984-25336131,25337292-253373... 28 8.6
02_02_0543 + 11360514-11361350,11361434-11361559,11361648-113619... 28 8.6
>07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601
Length = 390
Score = 31.9 bits (69), Expect = 0.53
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +2
Query: 302 VVMTLLSFGGGVLLSTTFMHVMPEVQENIEN--LQARNILQEFDFS 433
V + +F GV+L+T F+H++P+ +N+ + L A +EF F+
Sbjct: 83 VFFLVKAFAAGVILATGFIHILPDAFDNLTDDCLPAGGPWKEFPFA 128
>03_05_0608 - 26086437-26086892,26091253-26091921
Length = 374
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 320 SFGGGVLLSTTFMHVMPEVQENIEN-LQARNILQEFDFS 433
+F GV+L+T +MHV+P+ N+ + R EF F+
Sbjct: 101 AFASGVILATGYMHVLPDAFNNLTSPCLPRKPWSEFPFA 139
>06_03_0722 - 23869981-23870250
Length = 89
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 259 ALRRRRGDVQVYEPGGDDSALLRRRCAALNDFHARDA*SPR 381
A+RR R D+ + PG + A + RRCAA+ + H R PR
Sbjct: 7 AMRRLR-DL-LAPPGESELARMYRRCAAIEELHRRKRRGPR 45
>05_01_0470 - 3747783-3748097,3749433-3750305
Length = 395
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = +2
Query: 299 RVVMTLLSFGGGVLLSTTFMHVMPEVQENIENLQARNILQEFDFSLTPLLTCCGFFIMYL 478
R ++ + + GV+LST+ +HV+P+ + + DF L + G + L
Sbjct: 62 RGLLLVKCYAAGVILSTSLVHVLPDAHAALADCAVATRRPWRDFPFAGLFSLVGALLALL 121
Query: 479 IE 484
++
Sbjct: 122 VD 123
>08_02_0113 - 12715888-12716181,12717443-12717602,12718327-12718368,
12718443-12718465,12718616-12720653,12720736-12720965,
12722207-12722329,12722438-12723010,12724684-12724733,
12726828-12726923,12726987-12727394,12727609-12727795
Length = 1407
Score = 29.1 bits (62), Expect = 3.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 219 ISWKHRKAPPWKCLWPI 169
+SWKH K PW +W +
Sbjct: 1245 LSWKHNKCYPWNWVWQV 1261
>04_04_1377 - 33064906-33065607
Length = 233
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 370 RHHVHESR*EQHTASEGEQSHHHPVRRLER 281
+HH H H GE+ HHH ++ +R
Sbjct: 180 KHHHHHHHHHPHLQPHGEEQHHHHEQKHQR 209
>05_05_0186 + 23071429-23072034,23072182-23072331,23073247-23073552
Length = 353
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +2
Query: 302 VVMTLLSFGGGVLLSTTFMHVMPEVQENIEN 394
V +++ +F GGV+L+T +H++P E + +
Sbjct: 81 VFLSVKAFAGGVILATGLVHILPAAFEALSS 111
>07_03_1196 + 24714626-24714649,24715034-24715297
Length = 95
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Frame = -2
Query: 331 ASEGEQSHHHPVRRL---ERPRVF 269
A EGE+ HHH RR +RP VF
Sbjct: 52 ADEGEKYHHHAFRRFLGTQRPEVF 75
>02_05_1331 + 35736543-35736638,35737407-35737525,35737670-35737715,
35738117-35738172,35738452-35738547,35738844-35738961,
35739406-35739672,35740023-35740124,35740302-35740659,
35740750-35740863,35741045-35741676,35741895-35742103,
35742597-35742819,35743419-35743538,35743888-35743914,
35744281-35745045,35745431-35748511
Length = 2142
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 632 GDSIPDSVEFLASLLCPSVQRLLRTLKFLTSRSV 531
GD PD +E L S + + + ++ L FL +R +
Sbjct: 1282 GDQFPDEIEKLWSTVASNTRNIIPVLNFLITRGI 1315
>12_02_0365 + 18045340-18045783
Length = 147
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 329 GGVLLSTTFMHVMPEVQENIENLQ 400
GGVL+ T V+P VQ N E L+
Sbjct: 67 GGVLVERTIKEVLPAVQRNKEGLE 90
>03_04_0049 -
16814121-16814515,16815659-16815788,16815905-16815963,
16816610-16817102
Length = 358
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +2
Query: 323 FGGGVLLSTTFMHVMPEVQENIENLQARNILQEFDFSLTPLLTCCGFFIMYLIE 484
F GGV L T MH + + E +L L + +L C G+ + L +
Sbjct: 94 FAGGVFLGTAMMHFLADANETFADL-----LPGTAYPFAFMLACAGYVLTMLAD 142
>02_05_0039 +
25335690-25335883,25335984-25336131,25337292-25337349,
25337652-25338116,25338435-25338575,25338694-25339934
Length = 748
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 520 NNGQTDLLVRNLSVRKSRCTEGHSNEAKNSTESGIE 627
+ G D LVRN+SV + +NE NST +G E
Sbjct: 180 DRGDVDYLVRNISVDNGYMSV--TNEQNNSTSNGTE 213
>02_02_0543 +
11360514-11361350,11361434-11361559,11361648-11361976,
11362078-11362861
Length = 691
Score = 27.9 bits (59), Expect = 8.6
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 259 ALRRRRGDVQVYEPGGDDS-ALLRRRCAALNDFHARDA*SPREH*KFASEEHSSRI*FLT 435
A RR V V EP DD+ A+LRR + D HA + +P +S +S+ L
Sbjct: 225 AFERRFQKVHVAEPSVDDTVAILRRLKPSYQDHHAWISRTPPSSPPPSSPVATSQAIDLV 284
Query: 436 DSPIDVLRLL 465
D RLL
Sbjct: 285 DEACATARLL 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,258,585
Number of Sequences: 37544
Number of extensions: 440045
Number of successful extensions: 1307
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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