Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20716
(722 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18939| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=4.6) 31 1.2
SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 2.9
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 29 2.9
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) 29 2.9
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 2.9
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20) 29 2.9
SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_4456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_58162| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-14) 29 2.9
SB_45353| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_39096| Best HMM Match : Exo_endo_phos (HMM E-Value=4.6e-10) 29 2.9
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 29 3.8
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38) 28 6.7
SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0) 28 8.8
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_18939| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=4.6)
Length = 99
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 129 RHSHDHDDDTDGIVLAK-GISMVVLFCASMICGLIPQIIARKFDG 260
R H DD++ I +A I+ V+ A +ICGL+ I+ +K +G
Sbjct: 50 REREKHYDDSNVITIAAVAIAAVITCMALIICGLVYYIVKQKREG 94
>SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 904
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -3
Query: 450 VNRGVSEKSNS*RMFLACKFSMFSWTSGITCMKVVESSTPPPKESRVITTR--FVDLNV 280
+ + ++ K N+ +F A ++ S T+ + M++V PPP + +TTR F D +V
Sbjct: 83 LRKALNVKPNTSTVFKALEYVDLSITASSSSMRLVTVYRPPPSKVNKLTTRMFFDDFSV 141
>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
Length = 1175
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -3
Query: 450 VNRGVSEKSNS*RMFLACKFSMFSWTSGITCMKVVESSTPPPKESRVITTR--FVDLNV 280
+ + ++ K N+ +F A ++ S T+ + M++V PPP + +TTR F D +V
Sbjct: 83 LRKALNVKPNTSTVFKALEYVDLSITASSSSMRLVTVYRPPPSKVNKLTTRMFFDDFSV 141
>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
Length = 549
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -3
Query: 450 VNRGVSEKSNS*RMFLACKFSMFSWTSGITCMKVVESSTPPPKESRVITTR--FVDLNV 280
+ + ++ K N+ +F A ++ S T+ + M++V PPP + +TTR F D +V
Sbjct: 83 LRKALNVKPNTSTVFKALEYVDLSITASSSSMRLVTVYRPPPSKVNKLTTRMFFDDFSV 141
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -3
Query: 450 VNRGVSEKSNS*RMFLACKFSMFSWTSGITCMKVVESSTPPPKESRVITTR--FVDLNV 280
+ + ++ K N+ +F A ++ S T+ + M++V PPP + +TTR F D +V
Sbjct: 83 LRKALNVKPNTSTVFKALEYVDLSITASSSSMRLVTVYRPPPSKVNKLTTRMFFDDFSV 141
>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
Length = 672
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -3
Query: 450 VNRGVSEKSNS*RMFLACKFSMFSWTSGITCMKVVESSTPPPKESRVITTR--FVDLNV 280
+ + ++ K N+ +F A ++ S T+ + M++V PPP + +TTR F D +V
Sbjct: 387 LRKALNVKPNTSTVFKALEYVDLSITASSSSMRLVTVYRPPPSKVNKLTTRMFFDDFSV 445
>SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -3
Query: 450 VNRGVSEKSNS*RMFLACKFSMFSWTSGITCMKVVESSTPPPKESRVITTR--FVDLNV 280
+ + ++ K N+ +F A ++ S T+ + M++V PPP + +TTR F D +V
Sbjct: 187 LRKALNVKPNTSTVFKALEYVDLSITASSSSMRLVTVYRPPPSKVNKLTTRMFFDDFSV 245
>SB_4456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -3
Query: 450 VNRGVSEKSNS*RMFLACKFSMFSWTSGITCMKVVESSTPPPKESRVITTR--FVDLNV 280
+ + ++ K N+ +F A ++ S T+ + M++V PPP + +TTR F D +V
Sbjct: 477 LRKALNVKPNTSTVFKALEYVDLSITASSSSMRLVTVYRPPPSKVNKLTTRMFFDDFSV 535
>SB_58162| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-14)
Length = 624
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -3
Query: 450 VNRGVSEKSNS*RMFLACKFSMFSWTSGITCMKVVESSTPPPKESRVITTR--FVDLNV 280
+ + ++ K N+ +F A ++ S T+ + M++V PPP + +TTR F D +V
Sbjct: 324 LRKALNVKPNTSTVFKALEYVDLSITASSSSMRLVTVFRPPPSKVNKLTTRMFFDDFSV 382
>SB_45353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -3
Query: 450 VNRGVSEKSNS*RMFLACKFSMFSWTSGITCMKVVESSTPPPKESRVITTR--FVDLNV 280
+ + ++ K N+ +F A ++ S T+ + M++V PPP + +TTR F D +V
Sbjct: 83 LRKALNVKPNTSTVFKALEYVDLSITASSSSMRLVTVYRPPPSKVNKLTTRMFFDDFSV 141
>SB_39096| Best HMM Match : Exo_endo_phos (HMM E-Value=4.6e-10)
Length = 279
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -3
Query: 450 VNRGVSEKSNS*RMFLACKFSMFSWTSGITCMKVVESSTPPPKESRVITTR--FVDLNV 280
+ + ++ K N+ +F A ++ S T+ + M++V PPP + +TTR F D +V
Sbjct: 83 LRKALNVKPNTSTVFKALEYVDLSITASSSSMRLVTVYRPPPSKVNKLTTRMFFDDFSV 141
>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
Length = 1285
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -3
Query: 450 VNRGVSEKSNS*RMFLACKFSMFSWTSGITCMKVVESSTPPPKESRVITTR--FVDLNV 280
+ + ++ K N+ +F A ++ S T+ + M++V PPP + +TTR F D +V
Sbjct: 766 LRKALNVKPNTSTVFKALEYVDLSITASRSSMRLVTVYRPPPSKVNKLTTRMFFDDFSV 824
>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
Length = 525
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 535 DLLVRNLSVRKSRCTEGHSNEAKNSTESGIE 627
++LV S +KSRCT+G + + E+GIE
Sbjct: 231 EVLVCQRSDKKSRCTKGCPYQRRRRRETGIE 261
>SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1627
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +2
Query: 314 LLSFGGGVLLSTTFMHVMPEVQENIENLQARNILQEFDFSLTPLLTCCGFFIMYLI 481
L SFG GV+++ + +V N N+ A +FS+ L T CG F++Y+I
Sbjct: 599 LTSFGAGVMVAPNPID-FDQVFANFANITATG-----NFSV--LFTVCGLFLLYII 646
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 170 IGQRHFHGGAFLCFHDMWSNTSDHREKV*WLSVE 271
+G HFH G L + TSDHR V + VE
Sbjct: 633 LGNIHFHPGKVLYYGKAELKTSDHRPVVGLIEVE 666
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,037,777
Number of Sequences: 59808
Number of extensions: 497760
Number of successful extensions: 1400
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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