Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20716
         (722 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005869-1|AAH05869.2|  314|Homo sapiens solute carrier family 3...    41   0.004
BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like pro...    32   2.4  
BC029651-1|AAH29651.1| 1080|Homo sapiens KIAA1542 protein protein.     32   2.4  
AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein.     32   2.4  
D29954-1|BAA06224.1| 1507|Homo sapiens KIAA0056 protein.               31   5.5  
BC098398-1|AAH98398.1| 1498|Homo sapiens non-SMC condensin II co...    31   5.5  

>BC005869-1|AAH05869.2|  314|Homo sapiens solute carrier family 39
           (zinc transporter), member 3 protein.
          Length = 314

 Score = 41.1 bits (92), Expect = 0.004
 Identities = 19/83 (22%), Positives = 44/83 (53%)
 Frame = +2

Query: 293 TNRVVMTLLSFGGGVLLSTTFMHVMPEVQENIENLQARNILQEFDFSLTPLLTCCGFFIM 472
           + +++    +FGGGV L+T F  ++P V+E ++ + +   +   D+ L   +   GFF+ 
Sbjct: 40  SKKILSLCNTFGGGVFLATCFNALLPAVREKLQKVLSLGHIST-DYPLAETILLLGFFMT 98

Query: 473 YLIEELVHIYIHTERRIMDRQIY 541
             +E+L+  +   +   +D + +
Sbjct: 99  VFLEQLILTFRKEKPSFIDLETF 121


>BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like protein
            rA9 protein.
          Length = 1649

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 366  ITCMKVVESSTPP-PKESRVITTRFVDLNVPASSTESHQTFSR*SEVLDHISWKH 205
            +TC+ VVE   PP P   +  T R V+L  P+ S  +  + SR       +S +H
Sbjct: 960  VTCVTVVEPEAPPSPDVLQAATHRVVELRPPSRSRSTSSSRSRKKAKRKRVSREH 1014


>BC029651-1|AAH29651.1| 1080|Homo sapiens KIAA1542 protein protein.
          Length = 1080

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 366 ITCMKVVESSTPP-PKESRVITTRFVDLNVPASSTESHQTFSR*SEVLDHISWKH 205
           +TC+ VVE   PP P   +  T R V+L  P+ S  +  + SR       +S +H
Sbjct: 391 VTCVTVVEPEAPPSPDVLQAATHRVVELRPPSRSRSTSSSRSRKKAKRKRVSREH 445


>AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein.
          Length = 1654

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 366  ITCMKVVESSTPP-PKESRVITTRFVDLNVPASSTESHQTFSR*SEVLDHISWKH 205
            +TC+ VVE   PP P   +  T R V+L  P+ S  +  + SR       +S +H
Sbjct: 965  VTCVTVVEPEAPPSPDVLQAATHRVVELRPPSRSRSTSSSRSRKKAKRKRVSREH 1019


>D29954-1|BAA06224.1| 1507|Homo sapiens KIAA0056 protein.
          Length = 1507

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 76  HSHSYHTGPTDKQTKWLTDTAMTTMTIQMALYWPKAFPWW 195
           HSH +H+G   +   W   T +TT + +++ Y  KAF  W
Sbjct: 663 HSH-FHSGDDSQVLAWALLTLLTTESQELSRYLNKAFHIW 701


>BC098398-1|AAH98398.1| 1498|Homo sapiens non-SMC condensin II
           complex, subunit D3 protein.
          Length = 1498

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 76  HSHSYHTGPTDKQTKWLTDTAMTTMTIQMALYWPKAFPWW 195
           HSH +H+G   +   W   T +TT + +++ Y  KAF  W
Sbjct: 654 HSH-FHSGDDSQVLAWALLTLLTTESQELSRYLNKAFHIW 692


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,445,859
Number of Sequences: 237096
Number of extensions: 2232749
Number of successful extensions: 5463
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5462
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)