Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20716
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical p...    62   4e-10
U42437-4|AAA83498.2|  349|Caenorhabditis elegans Hypothetical pr...    53   2e-07
Z70306-5|CAO82011.1|  337|Caenorhabditis elegans Hypothetical pr...    52   3e-07
Z70306-4|CAH04694.1|  363|Caenorhabditis elegans Hypothetical pr...    52   3e-07
AL032648-3|CAA21695.1|  319|Caenorhabditis elegans Hypothetical ...    43   2e-04
AC017117-10|AAF16613.1|  171|Caenorhabditis elegans Hypothetical...    32   0.48 
AF106580-1|AAK73890.3|  582|Caenorhabditis elegans Abnormal embr...    31   0.63 
Z81076-10|CAB03059.1|  394|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z50863-1|CAA90736.3|  353|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical ...    30   1.9  
U28944-12|AAA68371.2|  363|Caenorhabditis elegans Hypothetical p...    29   2.5  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    28   5.9  
L26987-1|AAA62312.1|  627|Caenorhabditis elegans par-2 protein.        28   7.8  

>U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical
           protein F55F8.9 protein.
          Length = 477

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 28/81 (34%), Positives = 50/81 (61%)
 Frame = +2

Query: 263 SVEDAGTFKSTNRVVMTLLSFGGGVLLSTTFMHVMPEVQENIENLQARNILQEFDFSLTP 442
           + + +   K  + V+  L  F GGV L+T F+H+ PE++EN+E L   +  +  D+ +  
Sbjct: 38  TAQSSSKHKHVSLVLCLLTCFSGGVFLATCFLHLFPELRENLETLDTVHNFR-IDYPVGE 96

Query: 443 LLTCCGFFIMYLIEELVHIYI 505
           LL+C GFF+++ +EE+V + I
Sbjct: 97  LLSCLGFFLIFFLEEVVIMII 117


>U42437-4|AAA83498.2|  349|Caenorhabditis elegans Hypothetical
           protein F30B5.7 protein.
          Length = 349

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 24/58 (41%), Positives = 33/58 (56%)
 Frame = +2

Query: 314 LLSFGGGVLLSTTFMHVMPEVQENIENLQARNILQEFDFSLTPLLTCCGFFIMYLIEE 487
           L  F GGV L+T F+ ++P + E  E L     L  + F+    +TCCGFF +Y IEE
Sbjct: 48  LTCFAGGVFLATCFLDIIPHINEGYEELMETYDLN-WHFAYPQFVTCCGFFFIYFIEE 104


>Z70306-5|CAO82011.1|  337|Caenorhabditis elegans Hypothetical
           protein C06G8.3c protein.
          Length = 337

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
 Frame = +2

Query: 314 LLSFGGGVLLSTTFMHVMPEVQENI-ENLQARNILQEFDFSLTPLLTCCGFFIMYLIEEL 490
           L  F GGV ++T F+ VMP VQ+   E L+  N+  EF   +  L  C GFF +YLIEE+
Sbjct: 51  LSCFSGGVFMATCFLDVMPHVQQTYGEILETYNV--EFRLPMNQLFICVGFFFVYLIEEI 108


>Z70306-4|CAH04694.1|  363|Caenorhabditis elegans Hypothetical
           protein C06G8.3b protein.
          Length = 363

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
 Frame = +2

Query: 314 LLSFGGGVLLSTTFMHVMPEVQENI-ENLQARNILQEFDFSLTPLLTCCGFFIMYLIEEL 490
           L  F GGV ++T F+ VMP VQ+   E L+  N+  EF   +  L  C GFF +YLIEE+
Sbjct: 51  LSCFSGGVFMATCFLDVMPHVQQTYGEILETYNV--EFRLPMNQLFICVGFFFVYLIEEI 108


>AL032648-3|CAA21695.1|  319|Caenorhabditis elegans Hypothetical
           protein Y54G9A.4 protein.
          Length = 319

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +2

Query: 302 VVMTLLS-FGGGVLLSTTFMHVMPEVQENIENLQARNILQEFDFSLTPLLTCCGFFIMYL 478
           ++++L S F GGV LS  F+ ++P+  E  E++Q        D+    L+   GFF +YL
Sbjct: 45  LILSLFSCFAGGVFLSVCFLDMLPDCLEAWESVQTDTNYTS-DYPFVQLIALLGFFFVYL 103

Query: 479 IEEL 490
            EEL
Sbjct: 104 TEEL 107


>AC017117-10|AAF16613.1|  171|Caenorhabditis elegans Hypothetical
           protein F43C11.1 protein.
          Length = 171

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -3

Query: 342 SSTPPPKESRVITTRFVDLNVPASSTESHQTFSR*SEVLDHISWKHRKAP 193
           S  P P   +      +D+N P S+    QTFS+     D   WK  K P
Sbjct: 89  SEFPKPTAEKPSNNNAIDINAPRSTEHVEQTFSQFGIECDGDKWKATKYP 138


>AF106580-1|AAK73890.3|  582|Caenorhabditis elegans Abnormal
           embryonic partitioningof cytoplasm protein 2, isoform b
           protein.
          Length = 582

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 54  STRPLRSPLALLPHRANRQTNKMAYRHSHDHDDDTDGIVLAKG 182
           S RP +S L + P   N   +   + +SH H DD+  +VLA G
Sbjct: 144 SARPAKSSLKIPPEPLNHSLSPPGFHNSHHHRDDS--LVLAGG 184


>Z81076-10|CAB03059.1|  394|Caenorhabditis elegans Hypothetical
           protein F35C5.9 protein.
          Length = 394

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 46  YKRVRVLYEAHSHSYHTGPTDKQTKWLTDTAMTTMTI 156
           YK+V VL+ +  + YHT P D  T +L  T +T +T+
Sbjct: 163 YKKVVVLFTSKYNYYHTYPED-LTDYLKSTGVTIITV 198


>Z50863-1|CAA90736.3|  353|Caenorhabditis elegans Hypothetical
           protein C14H10.1 protein.
          Length = 353

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 314 LLSFGGGVLLSTTFMHVMPEVQENIEN 394
           LL F  G LL+  F+H++PE  E+ EN
Sbjct: 150 LLGFAIGSLLADVFLHLLPEAYESNEN 176


>AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical
           protein F58E2.3 protein.
          Length = 688

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 315 CSPSEAVCCSQRLSCT*CLKSKRTLKICKRGTFFKNLISH 434
           C     V  S+ L CT    S+ ++K+   G   KN++SH
Sbjct: 296 CEELRNVQSSKELECTSLCTSELSIKVLHNGLLMKNILSH 335


>U28944-12|AAA68371.2|  363|Caenorhabditis elegans Hypothetical
           protein C18A3.2 protein.
          Length = 363

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +2

Query: 332 GVLLSTTFMHVMPEVQENIENLQA-RNILQEFDF-SLTPLLTCCGFFIMYLIEELVH 496
           GV ++T F+ ++P V+    +L+  + I+  + +   T  L   GF I+ + E+++H
Sbjct: 50  GVFIATCFLGLVPHVRHQEMHLRGNQTIVDSYGWIPSTDQLVIIGFLIILITEQIIH 106


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 370 RHHVHESR*EQHTASEGEQSHHHPVRRLERPRVFYGEPSN 251
           +H +H    +QH AS   Q  HHP R    P   Y +PS+
Sbjct: 92  QHQLHHQN-QQHQASTSTQQFHHPQR---PPPPQYDQPSS 127


>L26987-1|AAA62312.1|  627|Caenorhabditis elegans par-2 protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 54  STRPLRSPLALLPHRANRQTNKMAYRHSHDHDDDTDGIVLAKG 182
           S RP +S L + P   N   +   + +SH  D   D +VLA G
Sbjct: 190 SARPAKSSLKIPPEPLNHSLSPPGFHNSHHRD---DSLVLAGG 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,850,061
Number of Sequences: 27780
Number of extensions: 368458
Number of successful extensions: 1318
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)