Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20716
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    25   0.55 
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    25   0.55 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.2  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.1  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 132 VCKPFCLFVCWPGVVGVRVGFVKD 61
           V KP C+ +C PG V  R+G++++
Sbjct: 58  VPKPLCIKICAPGCV-CRLGYLRN 80


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 132 VCKPFCLFVCWPGVVGVRVGFVKD 61
           V KP C+ +C PG V  R+G++++
Sbjct: 58  VPKPLCIKICAPGCV-CRLGYLRN 80


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 370 RHHVHESR*EQHTASEGEQSHHHPVRRLER 281
           RHH H      H  S   Q HH P ++ ++
Sbjct: 140 RHH-HLQNHHHHLQSTAVQDHHRPYQQQQQ 168


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 135 SHDHDDDTDGIVLAKGISM 191
           SH   D  DGIVLA GI++
Sbjct: 280 SHRSIDVKDGIVLATGITV 298


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 135 SHDHDDDTDGIVLAKGISM 191
           SH   D  DGIVLA GI++
Sbjct: 280 SHRSIDVKDGIVLATGITV 298


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = +3

Query: 90  PHRANRQTNKMAYRHSHDHDDDTDGI 167
           P+      N   Y+H  DH    DG+
Sbjct: 82  PYNRMDMRNATYYQHQQDHGSGMDGM 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,829
Number of Sequences: 438
Number of extensions: 4351
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)