Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20715
         (696 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   1.0  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   4.2  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   7.3  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   9.6  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   9.6  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   9.6  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 107 LSGSSIEDTLFRQPRRWLPVVEKRSRLY 24
           +SG +IED  F++  R  P+V   S +Y
Sbjct: 369 ISGRTIEDLFFKKVIRDTPIVAIISNMY 396


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 111 CINSIINKFNRYSSF 155
           CI SI NK+N++ S+
Sbjct: 56  CIWSIFNKWNQFRSY 70


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 314 NYDIRVGTGSGSDFNGTPSASL 379
           N+ + V +  GSDFN T   SL
Sbjct: 300 NHTLSVISTDGSDFNATEVDSL 321


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 85  IHYLGSHDVGCPLSR 41
           IH+L  H V C L+R
Sbjct: 366 IHHLARHAVACFLTR 380


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 302 SSVHFDFCQS 273
           S +HFD CQ+
Sbjct: 210 SEIHFDLCQA 219


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 302 SSVHFDFCQS 273
           S +HFD CQ+
Sbjct: 206 SEIHFDLCQA 215


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,192
Number of Sequences: 336
Number of extensions: 3027
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)